View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19615_low_23 (Length: 459)

Name: NF19615_low_23
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19615_low_23
NF19615_low_23
[»] chr2 (1 HSPs)
chr2 (13-459)||(45343732-45344178)


Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 13 - 459
Target Start/End: Original strand, 45343732 - 45344178
Alignment:
Q  13 aaaattattgttagtagagatgttagttttgaagaggataagggatggaattgggggaggaatgttgaagaagtaaagcatgacatattggtatgtgaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45343732 aaaattattgttagtagagatgttagttttgaagaggataagggatggaattgggggaggaatgttgaagaagtaaagcatgacatattggtatgtgaag 45343831  T
Q  113 gcaataatgatagtgaagattccacctttgaaagtgaagaagaggttgtagaagacactgaaacaccagctgacacagttcaagaggtagaaacaatgac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45343832 gcaataatgatagtgaagattccacctttgaaagtgaagaagaggttgtagaagacactgaaacaccagctgacacagttcaagaggtagaaacaatgac 45343931  T
Q  213 ctcaacatcaagtgattcatctaatgaagatccaccggtacatgctgaaggaagaattcgaaaagcacctaactatttgcaggattatgaaagtggtgaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45343932 ctcaacatcaagtgattcatctaatgaagatccaccggtacatgctgaaggaagaattcgaaaagcacctaactatttgcaggattatgaaagtggtgaa 45344031  T
Q  313 ggattgtccgcgggtgagaactattttgcaatgtttacttctcatgaagatccaaactcatttgaagaagctgaaaaagatgagaaatggagaaaggcaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45344032 ggattgtccgcgggtgagaactattttgcaatgtttacttctcatgaagatccaaactcatttgaagaagctgaaaaagatgagaaatggagaaaggcaa 45344131  T
Q  413 tggacttggagatggaggcgatagaaaagaataaaacttggcagctt 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  45344132 tggacttggagatggaggcgatagaaaagaataaaacttggcagctt 45344178  T

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