View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_24 (Length: 459)
Name: NF19615_low_24
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 24066088 - 24065830
Alignment:
| Q |
17 |
actcgttcctcaatcggtcgttagtaacaaatctcagccaggtacaatccttcatccacaatctagttttatatatgcagttcctatgattgaataaaat |
116 |
Q |
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| T |
24066088 |
actcgttcctcaatcggtcgttagtaacaaatctcagccaggtacaatccttcatccacaatctagttttatatatgcagttcctatgattgaatgaaat |
24065989 |
T |
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| Q |
117 |
ttctctaagagaatgcaatgggttatttgatgtagtaatttacaaagttagcttattatgtatattatgttaggctacttgataatttttctaagataac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24065988 |
ttctctaagagaatgcaatgggttatttgatgtagtaatttacaaagttagcttattatgtatattatgttaggctacttgataatttttctaagataac |
24065889 |
T |
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| Q |
217 |
ttcaaagttgttgcttcaaatttatgtaaatttttcatgttatttcactaataagttaaa |
276 |
Q |
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| T |
24065888 |
ttcaaagttgttgcttc-aatttatgtaaattttgcatgttatttcactaataagttaaa |
24065830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 327 - 459
Target Start/End: Complemental strand, 24065778 - 24065646
Alignment:
| Q |
327 |
actaggtgttcctacttctctgccaaacatatcaaatacacggtcacaacctctttcgagcaattcagatgctaatggtaggaacatttcgacattcaac |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24065778 |
actaggtgttcctacttctctgccaaacatatcaaatacacggtcacaacctctttcgagcaattcagatgctaatggtaggaacatttcgacattcaac |
24065679 |
T |
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| Q |
427 |
gtgaatgtatctgaaggaaagagaaaggagacc |
459 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
24065678 |
gtgaatttatctgaaggaaagagaaaggagacc |
24065646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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