View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_25 (Length: 456)
Name: NF19615_low_25
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 244 - 446
Target Start/End: Complemental strand, 28789976 - 28789776
Alignment:
| Q |
244 |
ttactcttcctctactctcttctttttcttctgcacccnnnnnnnnnctcttccactggtttccataaagattgagtctttttcttctctaccaaccatt |
343 |
Q |
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| T |
28789976 |
ttactcttgctctactctcttctttttcttctgcacccttttttt--ctcttccactggtttccataaagattgagtccctttcttctctaccaaccatt |
28789879 |
T |
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| Q |
344 |
tttgcatgccttgttttgttatcttgcattggttcttgataatatcgatgcttcttttccatgttgtgacttcctattctaaccaactttaccagttcct |
443 |
Q |
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| T |
28789878 |
tttgtatgccttgttttgttatcttgcattggttcttgataatatcgatgcttcttttccatgttgtgacttcctattctaaccaactttaccagttcct |
28789779 |
T |
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| Q |
444 |
ttg |
446 |
Q |
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||| |
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| T |
28789778 |
ttg |
28789776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 28790190 - 28790051
Alignment:
| Q |
24 |
atatatataacattggttgttttgagtgtgattcttggttttatatagcagcacaaaacacaagcttctattctatttcagcacgcttgctttatggtta |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28790190 |
atatatataacattggttgttttgagtgtgattcttggttttatatagcagcacaaaacacaagcttctattctatttcagcacgcttgctttatggtta |
28790091 |
T |
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| Q |
124 |
agctttcttactgaagaattttgcatagtttgaaatggaa |
163 |
Q |
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| T |
28790090 |
agctttcttactgaagaattttgcatagtttgaaatggaa |
28790051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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