View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_26 (Length: 447)
Name: NF19615_low_26
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Complemental strand, 38187548 - 38187132
Alignment:
| Q |
19 |
tagctacataggtggtaaaatttctagctacataggtggtggtcagtatattaatgtttttgagttttctggactgaaaaatttgacaacaattgtgttt |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38187548 |
tagctacagaggtggtaaaatttctagctacataggtggtggtcagtatattaatgtttttgagttttctggactgaaaaatttgacaacgattgtgttt |
38187449 |
T |
|
| Q |
119 |
gatggaatccgtgattgtctccaacgtttttccatgccccttttgttttctgaatgtctccaactcgaggacgtcacctttcaaaactgcaagcaaatgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38187448 |
gatggaatccgtgattgtctccaacgtttttccatgccccttttgttttctgaatgtctccaactcgaggacgtcacctttcaaaactgcaagcaaatgg |
38187349 |
T |
|
| Q |
219 |
atgatatgaatattatcagtccaaagttgcatcatttgaaaataatagattgtgagtataaccatctttatgccccgcaccgcatagatatcgatgcatt |
318 |
Q |
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| T |
38187348 |
ataatatgaatat--tcagtccaaagttgcatcatttcaaaataatagattgtgagtataaccatctttatgccccgcaccgcatagatatcgatgcatt |
38187251 |
T |
|
| Q |
319 |
gaatcttaaatcctttgaatatagcggtcaaatgacgaaagttatctcccttaaagctccaagtttattgaaggttttttggaatgcagctaatagagag |
418 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38187250 |
gaatcttaaatcctttgaatatagtggtcaaatgacgaaagttatctcccttaaagctccaagtttattgaaggttttttggaatgcagctaatagagag |
38187151 |
T |
|
| Q |
419 |
aaaaatccatgtccctttg |
437 |
Q |
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| T |
38187150 |
aaaaatccatgtccctttg |
38187132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 71 - 348
Target Start/End: Complemental strand, 38149609 - 38149340
Alignment:
| Q |
71 |
aatgtttttgagttttctggactgaaaaatttgacaacaattgtgtttgatggaatccgtgattgtctccaacgtttttccatgccccttttgttttctg |
170 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| | | ||| || ||||||||||||| |
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| T |
38149609 |
aatgcttttgagttttctggactgaaaaatgtgacaaccattgtgtttgatggaatccaaagatgtctccaagatgatgtcatacctcttttgttttctg |
38149510 |
T |
|
| Q |
171 |
aatgtctccaactcgaggacgtcacctttcaaaactgcaagcaaatggatgatatgaatattatcagtccaaagttgcatcatttgaaaataatagattg |
270 |
Q |
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|||||||||||||||| || |||||||| | || |||| | | |||| ||||||||| |||||||||||||| |||||||||| |||| ||||| |
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| T |
38149509 |
aatgtctccaactcga--acctcacctttaagaattgcaggatggtacgtgatttgaatattaccagtccaaagttgcgtcatttgaaattaattgattg |
38149412 |
T |
|
| Q |
271 |
tgagtataaccatctttatgccccgcaccgcatagatatcgatgcattgaatcttaaatcctttgaatatagcggtca |
348 |
Q |
| |
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|| |||| || |||| || | |||||||||||| ||||||||||||| | ||||||||||||||| ||||| |
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| T |
38149411 |
tggctatagaca--ttta----cctcgacgcatagatatcaatgcattgaatctcacatcctttgaatatagtggtca |
38149340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 273
Target Start/End: Complemental strand, 38157381 - 38157184
Alignment:
| Q |
76 |
ttttgagttttctggactgaaaaatttgacaacaattgtgtttgatggaatccgtgattgtctccaacgtttttccatgccccttttgttttctgaatgt |
175 |
Q |
| |
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||||| |||||||||||| |||||| ||||||| ||||| ||||||||||||| | | |||||||| | ||| | |||||||||||||||||| |
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| T |
38157381 |
ttttgggttttctggactaaaaaatgtgacaacgattgtatttgatggaatccatcaaaatctccaacaagatgtcattcgtcttttgttttctgaatgt |
38157282 |
T |
|
| Q |
176 |
ctccaactcgaggacgtcacctttcaaaactgcaagcaaatggatgatatgaatattatcagtccaaagttgcatcatttgaaaataatagattgtga |
273 |
Q |
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| T |
38157281 |
ctccaactcgaggatgtcacctttaagaactgttggatcatatataatttgaatattactagtacaaagttgcaccatttgaaaataattgattgtga |
38157184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 38172773 - 38172734
Alignment:
| Q |
160 |
tttgttttctgaatgtctccaactcgaggacgtcaccttt |
199 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| |
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| T |
38172773 |
tttgttttctgaatgtctccaacttgaggacgtcaccttt |
38172734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 425
Target Start/End: Complemental strand, 38157091 - 38157035
Alignment:
| Q |
369 |
ttaaagctccaagtttattgaaggttttttggaatgcagctaatagagagaaaaatc |
425 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||||||||||| ||||| ||||||| |
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| T |
38157091 |
ttaaggctccaatgttattgaagcttttttggaatgcagctaaaagagaaaaaaatc |
38157035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 38285817 - 38285777
Alignment:
| Q |
158 |
cttttgttttctgaatgtctccaactcgaggacgtcacctt |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
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| T |
38285817 |
cttttgttttctgtgtgtctccaactcgaggacgtcacctt |
38285777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 437
Target Start/End: Complemental strand, 38165661 - 38165603
Alignment:
| Q |
374 |
gctccaagtttattgaaggttttttggaatgcagctaatagagagaaaaatccatgtccctttg |
437 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||| ||| |||||||| |
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| T |
38165661 |
gctccaagtttattgaaggtt-----gaatgcagctaaaagagagaaaaatacatttccctttg |
38165603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 38321913 - 38321960
Alignment:
| Q |
374 |
gctccaagtttattgaaggttttttggaatgcagctaatagagagaaa |
421 |
Q |
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|||||||| ||||||||||||||||||||| ||||||| ||| ||||| |
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| T |
38321913 |
gctccaaggttattgaaggttttttggaatacagctaagagaaagaaa |
38321960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 12409355 - 12409232
Alignment:
| Q |
86 |
tctggactgaaaaatttgacaacaattgtgtttgatggaatccgtgattgtctccaacgtttttccatgccccttttgttttctgaatgtctccaactcg |
185 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| || ||| || ||| ||||||| || | | | |||| |||||||||||||||| ||||||||| | |
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|
| T |
12409355 |
tctggactgaaacatttgacgacaattgtgttagacggactctctgaatgtctccgacttactgtcctgccacttttgttttctgaatatctccaacttg |
12409256 |
T |
|
| Q |
186 |
aggacgtcacctttcaaaactgca |
209 |
Q |
| |
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|||||||||||||| | ||||||| |
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| T |
12409255 |
aggacgtcacctttaagaactgca |
12409232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 12421415 - 12421292
Alignment:
| Q |
86 |
tctggactgaaaaatttgacaacaattgtgtttgatggaatccgtgattgtctccaacgtttttccatgccccttttgttttctgaatgtctccaactcg |
185 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| || ||| || ||| ||||||| || | | | |||| |||||||||||||||| ||||||||| | |
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| T |
12421415 |
tctggactgaaacatttgacgacaattgtgttagacggactctctgaatgtctccgacttactgtcctgccacttttgttttctgaatatctccaacttg |
12421316 |
T |
|
| Q |
186 |
aggacgtcacctttcaaaactgca |
209 |
Q |
| |
|
|||||||||||||| | ||||||| |
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|
| T |
12421315 |
aggacgtcacctttaagaactgca |
12421292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 4163575 - 4163533
Alignment:
| Q |
369 |
ttaaagctccaagtttattgaaggttttttggaatgcagctaa |
411 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
4163575 |
ttaaagctccaaggttattgaaggttttttggaatgcaactaa |
4163533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 4225196 - 4225154
Alignment:
| Q |
369 |
ttaaagctccaagtttattgaaggttttttggaatgcagctaa |
411 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
4225196 |
ttaaagctccaaggttattgaaggttttttggaatgcaactaa |
4225154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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