View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19615_low_27 (Length: 445)

Name: NF19615_low_27
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19615_low_27
NF19615_low_27
[»] chr2 (11 HSPs)
chr2 (18-441)||(12244661-12245085)
chr2 (18-208)||(11999883-12000073)
chr2 (21-128)||(12235181-12235288)
chr2 (25-122)||(7542722-7542819)
chr2 (21-128)||(14703900-14704007)
chr2 (18-129)||(16657085-16657196)
chr2 (21-123)||(12258155-12258257)
chr2 (21-125)||(16661564-16661668)
chr2 (86-129)||(39373417-39373460)
chr2 (75-129)||(43625956-43626010)
chr2 (298-362)||(12000202-12000269)
[»] chr4 (3 HSPs)
chr4 (21-130)||(35132938-35133047)
chr4 (21-140)||(9335448-9335567)
chr4 (21-129)||(30775744-30775852)
[»] chr7 (17 HSPs)
chr7 (24-141)||(6790007-6790124)
chr7 (24-129)||(13333024-13333129)
chr7 (21-129)||(8585274-8585382)
chr7 (21-129)||(8654942-8655050)
chr7 (21-129)||(10493942-10494050)
chr7 (21-130)||(8667911-8668020)
chr7 (75-127)||(8629078-8629130)
chr7 (86-129)||(1302021-1302064)
chr7 (75-140)||(3147818-3147883)
chr7 (68-129)||(8647413-8647474)
chr7 (86-127)||(8659920-8659961)
chr7 (21-110)||(8671217-8671306)
chr7 (21-129)||(8546124-8546232)
chr7 (83-123)||(17268493-17268533)
chr7 (75-130)||(8582246-8582301)
chr7 (83-141)||(17260795-17260853)
chr7 (93-122)||(27830450-27830479)
[»] chr1 (4 HSPs)
chr1 (34-119)||(52549098-52549183)
chr1 (18-141)||(34466350-34466472)
chr1 (75-129)||(4678126-4678180)
chr1 (86-130)||(15595594-15595638)
[»] chr5 (1 HSPs)
chr5 (43-129)||(28220465-28220551)
[»] chr6 (1 HSPs)
chr6 (24-123)||(28911077-28911176)
[»] chr8 (1 HSPs)
chr8 (86-129)||(43745404-43745447)


Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 12245085 - 12244661
Alignment:
Q  18 attggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  12245085 attggtttgtcattgacaccagcagtgaccttgaacggccataataatgcatcatccagaacaataggatcactaaacttcctaccaattaatctcttag 12244986  T
Q  118 catctgaaaaaatgatattaataaggtctaattatttatttggtacataatttattagggaaattctaaatagatccatgaactataattttgctttttg 217  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12244985 catctgaaaaaacgatattaataaggtctaattatttatttggtccataatttattagggaaattctaaatagatccatgaactataattttgctttttg 12244886  T
Q  218 aacttctaaataatttgtaatttggttaatgggttttt-aataatgaatcattaaagattatttaaaagtaagttcaaaacctaaatacaaactttagtt 316  Q
    ||||| |||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12244885 aacttgtaaataatttgtaatttggtttttgggtttttaaataatgaatcattaaagattatttaaaagtaagttcaaaacctaaatacaaactttagtt 12244786  T
Q  317 taggaaccgtttataaaattctctttgctcaatagtctaggtaacaaaagcaaataaacaataaaaacaaacattcgaaggagtaaatgaattgatatta 416  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12244785 taggaaccgtttataatattctctttgctcaatagtctaggtaacaaaagcaaataaacaataaaaacaaacattcgaaggagtaaatgaattgatatta 12244686  T
Q  417 ccaaaaaccaaacttcatctcactc 441  Q
    |||||||||||||||||| ||||||    
T  12244685 ccaaaaaccaaacttcatttcactc 12244661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 11999883 - 12000073
Alignment:
Q  18 attggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttag 117  Q
    |||||||||||||||||| |||||||||||||||| |||||||| ||| ||||||| ||||||| | ||||||||||||||| |||||||||||||||||    
T  11999883 attggtttgtcattgacatcagcagtgaccttgaatggccataacaatccatcatcttgaacaacaagatcactaaacttccaaccaattaacctcttag 11999982  T
Q  118 catctgaaaaaatgatattaataaggtctaattatttatttggtacataatttattagggaaattctaaatagatccatgaactataattt 208  Q
    |||||||||||| |||||||||| |||||| |||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  11999983 catctgaaaaaacgatattaatagggtctagttatttgtttggtccataatttattagggaaattctaaatagattcatgaactataattt 12000073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 12235181 - 12235288
Alignment:
Q  21 ggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcat 120  Q
    |||||||||||||||||||||| ||||||||| ||||| || |  |||||||| |||||||   ||||||||||||||||||||||||||||||||||||    
T  12235181 ggtttgtcattgacaccagcagcgaccttgaatggccacaacatcacatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagcat 12235280  T
Q  121 ctgaaaaa 128  Q
    ||||||||    
T  12235281 ctgaaaaa 12235288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 7542722 - 7542819
Alignment:
Q  25 tgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcatct 122  Q
    |||||||| |||| ||||| |||||||| |||||||| | || |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7542722 tgtcattgtcacccgcagtcaccttgaatggccataacagtatatcatcttgaacaacaggatcactaaacttcctaccaattaacctcttagcatct 7542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 14703900 - 14704007
Alignment:
Q  21 ggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcat 120  Q
    |||||||||| ||| |||||||||||||| || |||||||| | || |||||| |||||||||||||| ||||||||||| || |  |||||||||||||    
T  14703900 ggtttgtcatcgactccagcagtgaccttaaatggccataaaagtatatcatcttgaacaataggatcgctaaacttccttcccaacaacctcttagcat 14703999  T
Q  121 ctgaaaaa 128  Q
    ||||||||    
T  14704000 ctgaaaaa 14704007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 16657196 - 16657085
Alignment:
Q  18 attggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttag 117  Q
    |||||||||||||| || || ||| |||||||||| ||||| || |  | |||||  ||||||| ||||||||||||||||||||| |||||||| ||||    
T  16657196 attggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttag 16657097  T
Q  118 catctgaaaaaa 129  Q
    ||||||||||||    
T  16657096 catctgaaaaaa 16657085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 12258257 - 12258155
Alignment:
Q  21 ggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcat 120  Q
    |||||| ||||||||||||||||||| || || ||||| || | || |||||| ||||| |   ||||||||||||||||||||||||||||||||||||    
T  12258257 ggtttgccattgacaccagcagtgactttaaatggccacaacattatatcatcttgaactacttgatcactaaacttcctaccaattaacctcttagcat 12258158  T
Q  121 ctg 123  Q
    |||    
T  12258157 ctg 12258155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 16661668 - 16661564
Alignment:
Q  21 ggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcat 120  Q
    ||||||||||| ||||||||| | |||||||||||||| || | || ||| |  |||||||  || |||||||| |||||||||||||||||||||||||    
T  16661668 ggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaacctcttagcat 16661569  T
Q  121 ctgaa 125  Q
    |||||    
T  16661568 ctgaa 16661564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 39373417 - 39373460
Alignment:
Q  86 atcactaaacttcctaccaattaacctcttagcatctgaaaaaa 129  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  39373417 atcattaaacttcctaccaattaacctcttagcatctgaaaaaa 39373460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 43625956 - 43626010
Alignment:
Q  75 tgaacaataggatcactaaacttcctaccaattaacctcttagcatctgaaaaaa 129  Q
    ||||||| || |||||||||||||||||| ||||||||||||||||||| |||||    
T  43625956 tgaacaacagaatcactaaacttcctaccgattaacctcttagcatctggaaaaa 43626010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 12000202 - 12000269
Alignment:
Q  298 ctaaatacaaacttt--agtttaggaa-ccgtttataaaattctctttgctcaatagtctaggtaaca 362  Q
    |||||||||||||||  |||||| ||| ||||||| |||||||||||| |||||||||| ||| ||||    
T  12000202 ctaaatacaaactttttagtttaagaaaccgtttaaaaaattctctttactcaatagtccaggcaaca 12000269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 35132938 - 35133047
Alignment:
Q  21 ggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcat 120  Q
    ||||||||||| ||||| |||||||||||||| |||||||  | || |||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  35132938 ggtttgtcatttacaccggcagtgaccttgaatggccatagcagtatatcatcttgaacaataggatcactaaacttcctaccaattaaccttttagcat 35133037  T
Q  121 ctgaaaaaat 130  Q
    ||||||||||    
T  35133038 ctgaaaaaat 35133047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 9335567 - 9335448
Alignment:
Q  21 ggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcat 120  Q
    ||||||||||| ||||||| | | |||||||| ||||| || |||| |||    |||||||   |||||||||||||||||||| |||| ||||||||||    
T  9335567 ggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaaccagatcactaaacttcctaccagttaatctcttagcat 9335468  T
Q  121 ctgaaaaaatgatattaata 140  Q
    ||| |||||| | |||||||    
T  9335467 ctgcaaaaataacattaata 9335448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 30775744 - 30775852
Alignment:
Q  21 ggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcat 120  Q
    ||||||||||| ||||||| |   |||||||| ||||| || || | ||| |  ||||||| ||| || ||||| ||||||||||||||||| |||||||    
T  30775744 ggtttgtcattaacaccagaaacaaccttgaatggccacaacaaaatatctttttgaacaacagggtcgctaaatttcctaccaattaaccttttagcat 30775843  T
Q  121 ctgaaaaaa 129  Q
    |||||||||    
T  30775844 ctgaaaaaa 30775852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 6790007 - 6790124
Alignment:
Q  24 ttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcatctg 123  Q
    ||||||||||| |||||| |||||||||| ||||| || |  | |||||  ||||||| || ||||||||||||||||||||||||||||||||||||||    
T  6790007 ttgtcattgacgccagcaatgaccttgaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaattaacctcttagcatctg 6790106  T
Q  124 aaaaaatgatattaataa 141  Q
    ||||||| | ||||||||    
T  6790107 aaaaaataacattaataa 6790124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 13333129 - 13333024
Alignment:
Q  24 ttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcatctg 123  Q
    ||||| |||||||||| ||| |||||||| ||||| || | || |||||  |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  13333129 ttgtcgttgacaccagaagtaaccttgaatggccacaacattatatcattttgaacaaccggatcactaaacttcctaccaattaacctcttagcatctg 13333030  T
Q  124 aaaaaa 129  Q
    ||||||    
T  13333029 aaaaaa 13333024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 8585382 - 8585274
Alignment:
Q  21 ggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcat 120  Q
    ||||||||||| |||||||   | |||||||| ||||| || | || |||||  |||||||  |||||||||||||||||||||||||||||||| ||||    
T  8585382 ggtttgtcattaacaccagagataaccttgaatggccacaacattatatcattttgaacaacgggatcactaaacttcctaccaattaacctcttggcat 8585283  T
Q  121 ctgaaaaaa 129  Q
    |||||||||    
T  8585282 ctgaaaaaa 8585274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 8654942 - 8655050
Alignment:
Q  21 ggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcat 120  Q
    ||||||||||| ||||||| ||| ||| |||| ||||| || |  | ||| |  |||||||||||||||||| |||||||||||||||||||||||||||    
T  8654942 ggtttgtcattaacaccagaagtaaccatgaatggccacaacatgatatccttttgaacaataggatcactatacttcctaccaattaacctcttagcat 8655041  T
Q  121 ctgaaaaaa 129  Q
    || ||||||    
T  8655042 ctaaaaaaa 8655050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 10494050 - 10493942
Alignment:
Q  21 ggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcat 120  Q
    ||||||||||||||||| | ||| |||||||| ||||| || | || ||| |  |||||||  ||||||||||||||||| |||||||||||||||||||    
T  10494050 ggtttgtcattgacacctgaagtaaccttgaatggccacaacattatatcgttttgaacaaccggatcactaaacttcctgccaattaacctcttagcat 10493951  T
Q  121 ctgaaaaaa 129  Q
    || ||||||    
T  10493950 ctaaaaaaa 10493942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 8667911 - 8668020
Alignment:
Q  21 ggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcat 120  Q
    ||||||||||| ||||||| | | |||||||| ||||| || |||| |||    |||||||  || ||||||||||||||||||||||||||||||||||    
T  8667911 ggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaacggggtcactaaacttcctaccaattaacctcttagcat 8668010  T
Q  121 ctgaaaaaat 130  Q
    ||| ||||||    
T  8668011 ctgcaaaaat 8668020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 8629078 - 8629130
Alignment:
Q  75 tgaacaataggatcactaaacttcctaccaattaacctcttagcatctgaaaa 127  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  8629078 tgaacaacaggatcactaaacttcctaccaattaacctcttggcatctgaaaa 8629130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 1302021 - 1302064
Alignment:
Q  86 atcactaaacttcctaccaattaacctcttagcatctgaaaaaa 129  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  1302021 atcactaaacttcctaccaattaatctcttagcatctgaaaaaa 1302064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 3147818 - 3147883
Alignment:
Q  75 tgaacaataggatcactaaacttcctaccaattaacctcttagcatctgaaaaaatgatattaata 140  Q
    ||||||| || ||||| |||||||||||||||||||||||| |||||| | ||||| | |||||||    
T  3147818 tgaacaacagaatcaccaaacttcctaccaattaacctctttgcatctaacaaaataaaattaata 3147883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 8647413 - 8647474
Alignment:
Q  68 atcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcatctgaaaaaa 129  Q
    ||||| |||||||| || ||||  |||||||||||| ||||||||||||||||||| |||||    
T  8647413 atcattctgaacaacagaatcaaaaaacttcctaccgattaacctcttagcatctggaaaaa 8647474  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 8659920 - 8659961
Alignment:
Q  86 atcactaaacttcctaccaattaacctcttagcatctgaaaa 127  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  8659920 atcactaaacttcctaccaattaatctctttgcatctgaaaa 8659961  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 8671306 - 8671217
Alignment:
Q  21 ggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaac 110  Q
    ||||||||||| ||||||| | | |||||||| ||||| || |||| |||    |||||||  |||||||||||||||||||||||||||    
T  8671306 ggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaac 8671217  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 8546124 - 8546232
Alignment:
Q  21 ggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcat 120  Q
    ||||||||||| ||||| | | ||||||| || ||||| || | || ||||| ||||||||  | ||||||| | ||||| |||||||||||||| ||||    
T  8546124 ggtttgtcattaacaccggaaatgaccttaaagggccacaacagtagatcattctgaacaaaggaatcactatatttccttccaattaacctctttgcat 8546223  T
Q  121 ctgaaaaaa 129  Q
    ||| |||||    
T  8546224 ctgcaaaaa 8546232  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 17268493 - 17268533
Alignment:
Q  83 aggatcactaaacttcctaccaattaacctcttagcatctg 123  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  17268493 aggatcactaaacttcctaccaattagtctcttagcatctg 17268533  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 8582246 - 8582301
Alignment:
Q  75 tgaacaataggatcactaaacttcctaccaattaacctcttagcatctgaaaaaat 130  Q
    |||||||| | ||||||| | ||||| |||||||||||||| ||||||||||||||    
T  8582246 tgaacaatggaatcactatatttccttccaattaacctctttgcatctgaaaaaat 8582301  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 17260795 - 17260853
Alignment:
Q  83 aggatcactaaacttcctaccaattaacctcttagcatctgaaaaaatgatattaataa 141  Q
    ||||||||||||||||||||||| ||  |||||||||||||  ||||| || |||||||    
T  17260795 aggatcactaaacttcctaccaactagtctcttagcatctgtcaaaataatgttaataa 17260853  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 122
Target Start/End: Complemental strand, 27830479 - 27830450
Alignment:
Q  93 aacttcctaccaattaacctcttagcatct 122  Q
    ||||||||||||||||||||||||||||||    
T  27830479 aacttcctaccaattaacctcttagcatct 27830450  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 52549183 - 52549098
Alignment:
Q  34 caccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagca 119  Q
    |||| |||||||||||||| | |||||| |||| |||||| ||||||| |||||||||||||||| ||||||||||||||||||||    
T  52549183 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 52549098  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 34466472 - 34466350
Alignment:
Q  18 attggtttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttag 117  Q
    ||||| |||||||| ||||||||| | || ||||| |||||||| |  | |||    ||||||  |||||||||||| || || ||||||||||||||||    
T  34466472 attggcttgtcattaacaccagcaataactttgaatggccataacatcatatctgtttgaacatcaggatcactaaattttctgccaattaacctcttag 34466373  T
Q  118 catctgaaaaaatgatattaataa 141  Q
    ||||||| |||| |||||||||||    
T  34466372 catctga-aaaaggatattaataa 34466350  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 4678180 - 4678126
Alignment:
Q  75 tgaacaataggatcactaaacttcctaccaattaacctcttagcatctgaaaaaa 129  Q
    ||||||| || ||||||| || ||||||||||||||||||||||||||| |||||    
T  4678180 tgaacaacagaatcactatacctcctaccaattaacctcttagcatctgcaaaaa 4678126  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 15595594 - 15595638
Alignment:
Q  86 atcactaaacttcctaccaattaacctcttagcatctgaaaaaat 130  Q
    |||||||||||||||||  ||||| ||||||||||||||||||||    
T  15595594 atcactaaacttcctactgattaatctcttagcatctgaaaaaat 15595638  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 28220465 - 28220551
Alignment:
Q  43 tgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcatctgaaaaaa 129  Q
    |||||||||| ||||| ||   || |||||| ||||||| ||  |||||||||||||||||||||||||||||||||||||||||||    
T  28220465 tgaccttgaatggccacaactttatatcatcttgaacaacagagtcactaaacttcctaccaattaacctcttagcatctgaaaaaa 28220551  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 28911077 - 28911176
Alignment:
Q  24 ttgtcattgacaccagcagtgaccttgaacggccataataatacatcatcctgaacaataggatcactaaacttcctaccaattaacctcttagcatctg 123  Q
    |||||||||||||| ||| |||||||||||||| | || | |  ||| |  |||||||  |||||||||||||||||| |||||| ||||||||||||||    
T  28911077 ttgtcattgacaccggcaatgaccttgaacggcgacaacattgaatcgttttgaacaacgggatcactaaacttcctatcaattatcctcttagcatctg 28911176  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 43745404 - 43745447
Alignment:
Q  86 atcactaaacttcctaccaattaacctcttagcatctgaaaaaa 129  Q
    |||| |||||||||||||||||||||||||||||||||| ||||    
T  43745404 atcattaaacttcctaccaattaacctcttagcatctgacaaaa 43745447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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