View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_28 (Length: 441)
Name: NF19615_low_28
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 14 - 426
Target Start/End: Complemental strand, 34688122 - 34687702
Alignment:
| Q |
14 |
gaaagaggggatgtctaatacagatctagtccaacgacagatcctcctttt-aataaactattatgnnnnnnnnaagaactataaactgttatatttgtc |
112 |
Q |
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| T |
34688122 |
gaaagaggggatgtctaatacagatccagtacaacgacaaatcctcctttttaataaactcttatgttttttttaagaactataaactgttatgtttgtc |
34688023 |
T |
|
| Q |
113 |
cctgnnnnnnnnctattatgtttgttgtccattattttattattaaaaaattcagttctttttactaaaaatgttaaaggttcatctattgatcattttt |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688022 |
cctgaaaaaaaactattatgtttgttgtccattattttattattataaaattcagttctttttactaaaaatgttaaaggttcatctattgatcattttt |
34687923 |
T |
|
| Q |
213 |
ggaggaagggaaaaatatcattacccactaatcaaaatgatttgggaac----nnnnnnnnnnngaagggaaaatgatttgggaacttaccgtactaaat |
308 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
34687922 |
agaggaaggg-aaaatatcattacccaccaatcaaaatgatttgggaacttttatttttatttttaagggaaaatgatttgggaacttaccatactaaat |
34687824 |
T |
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| Q |
309 |
agc----atttctccttaaacatatatttttcaaatgattaattgatatgtatgtgatctatgtgtgtccaaatcatttatatttataaattgtgtctaa |
404 |
Q |
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| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |
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| T |
34687823 |
aacattaattactccttaaacatatatttttcaaatgattaattgatatgtatgtgatctatgtgtgtccaaatcatttatattggtaattagtgtctaa |
34687724 |
T |
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| Q |
405 |
gcaattgttgttcactcataat |
426 |
Q |
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| T |
34687723 |
gtaattgttgttcactcataat |
34687702 |
T |
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