View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19615_low_31 (Length: 432)

Name: NF19615_low_31
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19615_low_31
NF19615_low_31
[»] chr3 (11 HSPs)
chr3 (18-414)||(11490521-11490917)
chr3 (18-414)||(5052230-5052626)
chr3 (17-414)||(11496993-11497384)
chr3 (80-340)||(7491798-7492058)
chr3 (134-372)||(5966197-5966435)
chr3 (28-227)||(2920054-2920253)
chr3 (300-414)||(21539314-21539427)
chr3 (289-411)||(2919861-2919983)
chr3 (18-227)||(4091652-4091861)
chr3 (85-227)||(911085-911227)
chr3 (17-102)||(4114392-4114477)
[»] chr1 (2 HSPs)
chr1 (18-409)||(17312089-17312480)
chr1 (186-227)||(13933902-13933943)
[»] chr8 (1 HSPs)
chr8 (25-414)||(18388360-18388749)
[»] scaffold0603 (1 HSPs)
scaffold0603 (18-345)||(4204-4531)
[»] chr4 (2 HSPs)
chr4 (18-227)||(5989052-5989261)
chr4 (289-374)||(5988896-5988981)
[»] scaffold0267 (1 HSPs)
scaffold0267 (186-227)||(19223-19264)
[»] chr5 (2 HSPs)
chr5 (135-227)||(16447338-16447430)
chr5 (289-344)||(16447212-16447267)


Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 11490521 - 11490917
Alignment:
Q  18 tcatatagccctctattgtatgataaattatgtatcctttcatgtaggttctgttcatccaacctggtacaatatgaagatgaaatcattgtagctaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11490521 tcatatagccctctattgtatgataaattatgtatcctttcatgtaggttctgttcatccaacctggtacaatatgaagatgaaatcattgtagctaatt 11490620  T
Q  118 cattggtgaggctatacatttcaaagatttcttcctcatcaccaatagatcttcgatttattaacgatcttgacactagttcatcaaagtattcttctcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11490621 cattggtgaggctatacatttcaaagatttcttcctcatcaccaatagattgtcgatttattaacgatcttgacactagttcatcaaagtattcttctcc 11490720  T
Q  218 gactttttcctggtccgcggatgattctaccaaccctcctgtaatccacaactaaactacctaannnnnnnctaagatggaattcttcggaaaaattgaa 317  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||  |       |||||||||| ||||||||||||||||||    
T  11490721 gactttttcctggtccgcggatgattctaccaaccctcttgtaatccacaactgaactaccacatttttttctaagatggacttcttcggaaaaattgaa 11490820  T
Q  318 caatattcaaagcactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcac 414  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11490821 caatattcaaagcactgttttaaaggagccgatagataatggtagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcac 11490917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 5052626 - 5052230
Alignment:
Q  18 tcatatagccctctattgtatgataaattatgtatcctttcatgtaggttctgttcatccaacctggtacaatatgaagatgaaatcattgtagctaatt 117  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |||||| || || |    
T  5052626 tcatatagccctctattgtatgataaattacgtatcctttgatgtaagttctgttcgtccaacctggtacaatatgaagatgaaaccattgtggcaaaat 5052527  T
Q  118 cattggtgaggctatacatttcaaagatttcttcctcatcaccaatagatcttcgatttattaacgatcttgacactagttcatcaaagtattcttctcc 217  Q
    ||| |  |||||||| |||||||||| || |||||||||  |||||||||  ||||| ||| ||||||||||||||||||||||||||||| ||||||||    
T  5052526 catggaggaggctatgcatttcaaagtttgcttcctcattgccaatagattgtcgatgtatcaacgatcttgacactagttcatcaaagtactcttctcc 5052427  T
Q  218 gactttttcctggtccgcggatgattctaccaaccctcctgtaatccacaactaaactacctaannnnnnnctaagatggaattcttcggaaaaattgaa 317  Q
    |||||||||||| || ||||| ||||||||||||||| ||| ||||||||||| ||| |||  |       |||||||| | ||||||||||||||||||    
T  5052426 gactttttcctgatctgcggaggattctaccaacccttctgcaatccacaactgaaccaccacatttttttctaagatgtatttcttcggaaaaattgaa 5052327  T
Q  318 caatattcaaagcactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcac 414  Q
    ||||||||||||||||||||||||||||| || ||| |||  |||||| ||||||| |||||||| ||   ||| ||||| ||||||||||||||||    
T  5052326 caatattcaaagcactgttttaaaggagctgaaagagaattgtagctcgattgtagcgcaggttggacgacatattgtaccaattcccaaatgtcac 5052230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 11496993 - 11497384
Alignment:
Q  17 atcatatagccctctattgtatgataaattatgtatcctttcatgtaggttctgttcatccaacctggtacaatatgaagatgaaatcattgtagctaat 116  Q
    |||||||| ||||||| ||||||| |||||||||| || || ||||||||| ||||| ||||||||| |||| ||||||||||||| ||||||||||||     
T  11496993 atcatatatccctctagtgtatgacaaattatgtacccctttatgtaggttatgttcgtccaacctgatacagtatgaagatgaaaccattgtagctaaa 11497092  T
Q  117 tcattggtgaggctatacatttcaaagatttcttcctcatcaccaatagatcttcgatttattaacgatcttgacactagttcatcaaagtattcttctc 216  Q
    |||| | | ||| | | |||||||||| |||||      ||||||||||| | ||||| ||| ||||| | ||| ||||||  |||||||||||||| ||    
T  11497093 tcatggataaggttttgcatttcaaagttttct------tcaccaatagaccgtcgatgtatcaacgaccatgatactagtatatcaaagtattcttttc 11497186  T
Q  217 cgactttttcctggtccgcggatgattctaccaaccctcctgtaatccacaactaaactacctaannnnnnnctaagatggaattcttcggaaaaattga 316  Q
    ||||||||||||| ||   ||| |||||||| || ||| ||| |||||||| || ||||| |  |       |||||||||| |||||||||||||||||    
T  11497187 cgactttttcctgatctatggacgattctactaagccttctgcaatccacagctgaactatcacatttttttctaagatggagttcttcggaaaaattga 11497286  T
Q  317 acaatattcaaagcactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcac 414  Q
     |||||| |||||||| ||||||||||||  || ||||| || ||| ||| |||||||||||||||||| | ||||  ||   |||||||||||||||    
T  11497287 gcaatatgcaaagcaccgttttaaaggaggagaaagatagtggtagttcagttgtagagcaggttgcacgtcataacctattgattcccaaatgtcac 11497384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 80 - 340
Target Start/End: Original strand, 7491798 - 7492058
Alignment:
Q  80 cctggtacaatatgaagatgaaatcattgtagctaattcattggtgaggctatacatttcaaagatttcttcctcatcaccaatagatcttcgatttatt 179  Q
    |||| ||| ||||||||| |||| | |||||||||| |||| ||||||| ||| || ||||| | || |||||| || ||||||||||| ||||| |||     
T  7491798 cctgttaccatatgaagacgaaaccgttgtagctaaatcatgggtgaggttatgcacttcaacgtttgcttccttattaccaatagatcatcgatgtatc 7491897  T
Q  180 aacgatcttgacactagttcatcaaagtattcttctccgactttttcctggtccgcggatgattctaccaaccctcctgtaatccacaactaaactacct 279  Q
    ||||| |||||||| ||| ||||||||||||||||||| | |||||| || || | | | |||||||| || ||| ||| ||||||||||| ||||| |     
T  7491898 aacgaacttgacacaagtacatcaaagtattcttctccaaatttttcatgatctgtgtacgattctacaaagccttctgcaatccacaactgaactaaca 7491997  T
Q  280 aannnnnnnctaagatggaattcttcggaaaaattgaacaatattcaaagcactgttttaa 340  Q
     |       |||||||||| ||||| |||||||| |||||||||||||| ||| |||||||    
T  7491998 tatttttttctaagatggacttctttggaaaaatagaacaatattcaaaacaccgttttaa 7492058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 134 - 372
Target Start/End: Complemental strand, 5966435 - 5966197
Alignment:
Q  134 catttcaaagatttcttcctcatcaccaatagatcttcgatttattaacgatcttgacactagttcatcaaagtattcttctccgactttttcctggtcc 233  Q
    |||||||||| ||| |||||||| ||||||||||  | |||  |  || || |||||||||||| |||||||||||||||| || |||||||||||||      
T  5966435 catttcaaagttttgttcctcattaccaatagattgttgatgcagcaatgaccttgacactagtacatcaaagtattcttcaccaactttttcctggttt 5966336  T
Q  234 gcggatgattctaccaaccctcctgtaatccacaactaaactacctaannnnnnnctaagatggaattcttcggaaaaattgaacaatattcaaagcact 333  Q
      ||| |||||||| || ||| ||| ||||||||||| ||||||| ||       ||| |||||| |||||||||||||||||||||||| ||||||| |    
T  5966335 atggacgattctactaagccttctgcaatccacaactgaactaccaaatttttttctatgatggacttcttcggaaaaattgaacaatatgcaaagcagt 5966236  T
Q  334 gttttaaaggagccgatagataatgctagctcaattgta 372  Q
     ||||||| ||| ||| ||||| || ||| ||| |||||    
T  5966235 tttttaaaagagtcgaaagatagtgatagttcagttgta 5966197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 227
Target Start/End: Complemental strand, 2920253 - 2920054
Alignment:
Q  28 ctctattgtatgataaattatgtatcctttcatgtaggttctgttcatccaacctggtacaatatgaagatgaaatcattgtagctaattcattggtgag 127  Q
    ||||||||||||| ||| |||||| ||||||||||| | | ||||  || |||||| |||| |||| | |||||| | |||  ||||| |||| |||||     
T  2920253 ctctattgtatgacaaagtatgtaccctttcatgtaagatttgtttgtcaaacctgatacagtatggatatgaaacccttgaggctaaatcatgggtgaa 2920154  T
Q  128 gctatacatttcaaagatttcttcctcatcaccaatagatcttcgatttattaacgatcttgacactagttcatcaaagtattcttctccgactttttcc 227  Q
    | ||| |||||||||  || |||||||  || ||||||||| ||  | ||||||||| ||||||||||||  ||||||||||||||| || |||||||||    
T  2920153 gttattcatttcaaaccttgcttcctcgccatcaatagatcgtctctgtattaacgaccttgacactagtatatcaaagtattcttccccaactttttcc 2920054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 21539314 - 21539427
Alignment:
Q  300 ttcttcggaaaaattgaacaatattcaaagcactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataat-gtaca 398  Q
    ||||| ||||||||||||||| ||||||||||| ||||||||||| |||| |||| ||| ||| ||||||||||| |||||||||| | ||||| ||||     
T  21539314 ttctttggaaaaattgaacaa-attcaaagcacggttttaaaggatccga-agatcatggtagttcaattgtagaacaggttgcacgtgataatggtacc 21539411  T
Q  399 aattcccaaatgtcac 414  Q
    ||||||||||||||||    
T  21539412 aattcccaaatgtcac 21539427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 411
Target Start/End: Complemental strand, 2919983 - 2919861
Alignment:
Q  289 ctaagatggaattcttcggaaaaattgaacaatattcaaagcactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcacctt 388  Q
    |||||||||| | ||| |||||||||||||||||| |||||||  |||||||||||| ||| |||||    ||||||||||||||| | | ||| ||||     
T  2919983 ctaagatggactcctttggaaaaattgaacaatatgcaaagcagcgttttaaaggagtcgaaagatagaagtagctcaattgtagaccggcttggacctc 2919884  T
Q  389 ataatgtacaaattcccaaatgt 411  Q
    ||||| ||  ||||||| |||||    
T  2919883 ataatctatcaattccccaatgt 2919861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 4091652 - 4091861
Alignment:
Q  18 tcatatagccctctattgtatgataaattatgtatcctttcatgtaggttctgttcatccaacctggtacaatatgaagatgaaatcattgtagctaatt 117  Q
    ||||||| ||||||||||||||| ||||   | | |||||||||| | || ||||| ||||||||  ||||||| | ||||||||  || |||||||| |    
T  4091652 tcatatatccctctattgtatgacaaatgtcgcaccctttcatgtggcttatgttcttccaacctaatacaataaggagatgaaactatcgtagctaaat 4091751  T
Q  118 cattggtgaggctatacatttcaaagatttcttcctcatcaccaatagatcttcgatttattaacgatcttgacactagttcatcaaagtattcttctcc 217  Q
    ||||| |||||  || |||||||||| || |||||  |||| | || || ||| ||  ||| |   | || ||||||||||||||||||||||||||  |    
T  4091752 cattgatgaggtcatgcatttcaaagcttacttccagatcatcgatggacctttgacgtatcagacacctcgacactagttcatcaaagtattcttcggc 4091851  T
Q  218 gactttttcc 227  Q
     |||||||||    
T  4091852 tactttttcc 4091861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 911085 - 911227
Alignment:
Q  85 tacaatatgaagatgaaatcattgtagctaattcattggtgaggctatacatttcaaagatttcttcctcatcaccaatagatcttcgatttattaacga 184  Q
    ||||||||| | |||||| |||||||||||| |||||  |||||   | |||||||||| || ||| | ||||| ||| |  |   |||| |||||  ||    
T  911085 tacaatatggatatgaaaccattgtagctaaatcattaatgaggtcgtgcatttcaaagcttgctttcccatcatcaacaagttgccgatgtattagtga 911184  T
Q  185 tcttgacactagttcatcaaagtattcttctccgactttttcc 227  Q
     |||||||||||||||||||||||||| ||||| |||||||||    
T  911185 ccttgacactagttcatcaaagtattcctctccaactttttcc 911227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 4114392 - 4114477
Alignment:
Q  17 atcatatagccctctattgtatgataaattatgtatcctttcatgtaggttctgttcatccaacctggtacaatatgaagatgaaa 102  Q
    |||||||  |||| |||||||||| |||| | ||| |||||||| | | ||||||||||||||| |  ||||||||| ||||||||    
T  4114392 atcatattcccctatattgtatgacaaatgacgtaccctttcatttggcttctgttcatccaacttaatacaatatggagatgaaa 4114477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 17312480 - 17312089
Alignment:
Q  18 tcatatagccctctattgtatgataaattatgtatcctttcatgtaggttctgttcatccaacctggtacaatatgaagatgaaatcattgtagctaatt 117  Q
    |||||| | |||||||||||||||||||||| ||||||| |||||| ||||||| | ||||||| |||||||||||||||||||| ||||||||| || |    
T  17312480 tcatatggtcctctattgtatgataaattatctatccttgcatgtaagttctgtccgtccaaccaggtacaatatgaagatgaaaccattgtagccaaat 17312381  T
Q  118 cattggtgaggctatacatttcaaagatttcttcctcatcaccaatagatcttcgatttattaacgatcttgacactagttcatcaaagtattcttctcc 217  Q
    ||| |  |||||||| |||||||||| || |||||||||  |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  17312380 catggaggaggctatgcatttcaaagtttgcttcctcattgccaatagatcgtcgatgtatcaacgatcttgacactagttcatcaaagtattcttctcc 17312281  T
Q  218 gactttttcctggtccgcggatgattctaccaaccctcctgtaatccacaactaaactacctaannnnnnnctaagatggaattcttcggaaaaattgaa 317  Q
    |||||||||||| || ||||| ||||||||||||||| ||| ||||||||| | |||||||  |       |||||||||| ||||||||||||||||||    
T  17312280 gactttttcctgatctgcggacgattctaccaacccttctgcaatccacaattgaactaccgcatttttttctaagatggatttcttcggaaaaattgaa 17312181  T
Q  318 caatattcaaagcactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaat 409  Q
    ||||||||||||||| ||||||||||| ||   ||||||   ||||||||||||||||||||| | |  | ||||||||| |||||||||||    
T  17312180 caatattcaaagcaccgttttaaaggatccagaagataacagtagctcaattgtagagcaggtagaatatcataatgtaccaattcccaaat 17312089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 13933943 - 13933902
Alignment:
Q  186 cttgacactagttcatcaaagtattcttctccgactttttcc 227  Q
    |||||||||||||||||||||||||||||  | |||||||||    
T  13933943 cttgacactagttcatcaaagtattcttcggctactttttcc 13933902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 25 - 414
Target Start/End: Complemental strand, 18388749 - 18388360
Alignment:
Q  25 gccctctattgtatgataaattatgtatcctttcatgtaggttctgttcatccaacctggtacaatatgaagatgaaatcattgtagctaattcattggt 124  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||| |||||||||||||||||| | |||||||||| ||||        
T  18388749 gccctctattgtatgatatattatgtatcctctcaagtaggttctgttcgtccaacctgatacaatatgaagatgaaacctttgtagctaaatcatgaac 18388650  T
Q  125 gaggctatacatttcaaagatttcttcctcatcaccaatagatcttcgatttattaacgatcttgacactagttcatcaaagtattcttctccgactttt 224  Q
    ||||  || |||||||||| || ||||| |||||||||| |||  | ||| ||| || || |||||||||||||||||||||||||||||| ||||||||    
T  18388649 gaggtcatgcatttcaaagtttgcttccccatcaccaattgattgttgatgtatcaaagaccttgacactagttcatcaaagtattcttctgcgactttt 18388550  T
Q  225 tcctggtccgcggatgattctaccaaccctcctgtaatccacaactaaactacctaannnnnnnctaagatggaattcttcggaaaaattgaacaatatt 324  Q
    |||||||| ||| | |||||||  || ||| ||| ||||||||||| |||||||  |        ||||||||| ||||| || |||||||||||| ||     
T  18388549 tcctggtctgcgaacgattctaataagccttctgcaatccacaactgaactaccacaattttttttaagatggacttctttgggaaaattgaacaaaatg 18388450  T
Q  325 caaagcactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcac 414  Q
    |||||||| |||||||||||| ||||||||||   ||| |||||||||||||| | ||||| | ||||| ||| ||||||||||||||||    
T  18388449 caaagcaccgttttaaaggagtcgatagataactgtagatcaattgtagagcacggtgcacatcataatctaccaattcccaaatgtcac 18388360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 4204 - 4531
Alignment:
Q  18 tcatatagccctctattgtatgataaattatgtatcctttcatgtaggttctgttcatccaacctggtacaatatgaagatgaaatcattgtagctaatt 117  Q
    |||||||  ||||||||||||||||| ||||||| ||| ||||| |  |  | ||| ||||   || |||||| || |||||||| | || ||||||| |    
T  4204 tcatatatacctctattgtatgataagttatgtaccctatcatgaaaatcatcttcgtccatattgatacaatttggagatgaaacctttatagctaaat 4303  T
Q  118 cattggtgaggctatacatttcaaagatttcttcctcatcaccaatagatcttcgatttattaacgatcttgacactagttcatcaaagtattcttctcc 217  Q
    ||| |   ||| ||| |||||||||| || ||||| ||||||||||||||| ||||| ||| || || |||||||||| | || ||||||||||||||||    
T  4304 catggaccaggttatgcatttcaaagtttgcttccccatcaccaatagatcgtcgatgtatcaatgaccttgacactaatacagcaaagtattcttctcc 4403  T
Q  218 gactttttcctggtccgcggatgattctaccaaccctcctgtaatccacaactaaactacctaannnnnnnctaagatggaattcttcggaaaaattgaa 317  Q
     |||||||||||||  | ||| |||| ||| || ||| ||| ||||||||||| ||||  | ||       ||| |||||| ||||| ||||||||||||    
T  4404 aactttttcctggtttgtggacgattttactaagccttctgcaatccacaactgaactgtcaaatttttttctatgatggacttctttggaaaaattgaa 4503  T
Q  318 caatattcaaagcactgttttaaaggag 345  Q
    ||||| ||||||||  ||||||||||||    
T  4504 caatactcaaagcatcgttttaaaggag 4531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 5989261 - 5989052
Alignment:
Q  18 tcatatagccctctattgtatgataaattatgtatcctttcatg-taggttctgttcatccaacctggtacaatatgaagatgaaatcattgtagctaat 116  Q
    ||||||||||||||||||||||| || ||| |||  | | |||| ||| || ||||| || |||||| ||||||||  ||||| || ||||||||||||     
T  5989261 tcatatagccctctattgtatgacaagttacgtacacctacatgatagatt-tgttcgtctaacctgatacaatattgagatgcaaccattgtagctaaa 5989163  T
Q  117 tcattggtgaggctatacatttcaaagatttcttcctcatcaccaatagatcttcgatttattaacgatcttgacactagttcatcaaagtattcttctc 216  Q
    |||| | ||||| ||| |||||||||||||||||| |||||| |||||||||  || | ||| || || ||||||||||||  |||||||||||||||||    
T  5989162 tcatggatgaggttattcatttcaaagatttcttcttcatcatcaatagatcgccgttgtatcaatgaccttgacactagtatatcaaagtattcttctc 5989063  T
Q  217 cgactttttcc 227  Q
    | |||||||||    
T  5989062 caactttttcc 5989052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 374
Target Start/End: Complemental strand, 5988981 - 5988896
Alignment:
Q  289 ctaagatggaattcttcggaaaaattgaacaatattcaaagcactgttttaaaggagccgatagataatgctagctcaattgtaga 374  Q
    |||||| ||| | ||| |||||||||||||||||| |||||||   ||||||||||| ||| |||| |   |||||||||||||||    
T  5988981 ctaagacggactcctttggaaaaattgaacaatatgcaaagcagccttttaaaggagtcgaaagatgagagtagctcaattgtaga 5988896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 19264 - 19223
Alignment:
Q  186 cttgacactagttcatcaaagtattcttctccgactttttcc 227  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  19264 cttgacactagttcatcaaagtattcttctcctactttttcc 19223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 16447430 - 16447338
Alignment:
Q  135 atttcaaagatttcttcctcatcaccaatagatcttcgatttattaacgatcttgacactagttcatcaaagtattcttctccgactttttcc 227  Q
    ||||||||| || ||||||||||| | ||||||| | | | ||| ||| | || |||||||||  |||||||||||||||||| |||||||||    
T  16447430 atttcaaagtttgcttcctcatcatcgatagatcgtagttgtatcaacaacctcgacactagtagatcaaagtattcttctccaactttttcc 16447338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 16447267 - 16447212
Alignment:
Q  289 ctaagatggaattcttcggaaaaattgaacaatattcaaagcactgttttaaagga 344  Q
    |||||||||||||||| |||||| ||||||||||| ||||||| | ||||| ||||    
T  16447267 ctaagatggaattctttggaaaatttgaacaatatgcaaagcattcttttagagga 16447212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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