View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19615_low_32 (Length: 432)
Name: NF19615_low_32
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 50203051 - 50202761
Alignment:
| Q |
10 |
attattctcgaggaattcaattctacattcaactagtctactgagagtatataatatacataccccactgaaaaatcacaaacactttcccttttctgaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50203051 |
attattctcgaggaattcaattctacattcaactagtctacttagagtgtataatatacgtaccccactgaaaaatcacaaacactttcccttttctgaa |
50202952 |
T |
|
| Q |
110 |
atgagttaatagtactgacagaacccgtgattggtttatttctggataaggnnnnnnngcaagggaaagtgaaattatgacatggatgttcatggatcaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50202951 |
atgagttaatagtactgacagaacccgtgattggtttatttctggataaggaaaaaaagcaagggaaagtgaaattatgacatggatgttcatggatcaa |
50202852 |
T |
|
| Q |
210 |
ccgacactgtactc-------------------tactaatactactctcttcttttcaataaaacgaagttacctatttaagcttcaactt |
281 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50202851 |
ccgacactgtactctcctaatggctcaaacaaatactaatactactctcttcttttcaataaaacgaagttacctatttaagcttcaactt |
50202761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 294 - 432
Target Start/End: Complemental strand, 50202638 - 50202500
Alignment:
| Q |
294 |
ttcaccttatactagttgaatacctacgatttacgttgctcttaaccaaagcaacattgaaatttgaagcttcatattcttattctcaaagtctaataaa |
393 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50202638 |
ttcaacttatactagttgaatacctacgatttacgttgctcttacccaaagcaacattgaaatttgaagcttcatattcttattctcaaagtctaataaa |
50202539 |
T |
|
| Q |
394 |
agcagcctccagaggagaaagaacaaagtggattatttt |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50202538 |
agcagcctccagaggagaaagaacaaagtggattatttt |
50202500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University