View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_40 (Length: 392)
Name: NF19615_low_40
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Original strand, 28733088 - 28733446
Alignment:
| Q |
14 |
aggcattggaaacacttggtacaactcaaatgcaattggaagctgcaaataagacagtggaaacgctccgattagaaggtgcaaaagcgtcagaagatta |
113 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733088 |
aggcattggaaacagttggtacaactcaaatgcaattggaagctgcaaataagacagtggaaacgctccgattagaaggtgcaaaagcgtcagaagatta |
28733187 |
T |
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| Q |
114 |
ccaatccttagctttagagttagagaaatcaaggtctcaagtaagctcactggaggaacttgtgagcaaacttcaggatgatttggtcagtggagtcggt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733188 |
ccaatccttagctttagagttagagaaatcaaggtctcaagtaagctcactggaggaacttgtgagcaaacttcaggatgatttggtcagtggagtcggt |
28733287 |
T |
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| Q |
214 |
ttatctcctcgcttacctgcattggaagttgtagaaagcgaggagataaaccggctcaaagccgagcttgtttccgttaaagctgaagcagggcagttaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
28733288 |
ttatctcctcgcttacctgcattggaagttgtagaaagcgaggagataaaccggctcaaagccgagcttgtttcagttaaagctgaagcagggcagctaa |
28733387 |
T |
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| Q |
314 |
aatctgcactggatggtgccgaggtaagatatcagaatgagtatatccaaagcacattg |
372 |
Q |
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| T |
28733388 |
aatctgcactggatggtgccgaggtaagatatcagaatgagtatatccaaagcacattg |
28733446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 22109981 - 22110127
Alignment:
| Q |
40 |
caaatgcaattggaagctgcaaataagacagtggaaacgctccgattagaaggtgcaaaagcgtcagaagattaccaatccttagctttagagttagaga |
139 |
Q |
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| T |
22109981 |
caaatgcaattggaaacggtaaataagacagtggaaacactccgatcagatggtctaaaagcaactgaagcttacaagtccttagctttggagttggagc |
22110080 |
T |
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| Q |
140 |
aatcaaggtctcaagtaagctcactggaggaacttgtgagcaaactt |
186 |
Q |
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| T |
22110081 |
aatcaagatctcaagcaaagtccttggaggaacttgtgaggaaactt |
22110127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 40584608 - 40584462
Alignment:
| Q |
40 |
caaatgcaattggaagctgcaaataagacagtggaaacgctccgattagaaggtgcaaaagcgtcagaagattaccaatccttagctttagagttagaga |
139 |
Q |
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| T |
40584608 |
caaatgcaattggaaacggtaaataagacagtggaaacactccgatcagatggtctaaaagcaactgaagcttacaagtccttagctttggagttggagc |
40584509 |
T |
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| Q |
140 |
aatcaaggtctcaagtaagctcactggaggaacttgtgagcaaactt |
186 |
Q |
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| T |
40584508 |
aatcaagatctcaagcaaagtccttggaggaacttgtgaggaaactt |
40584462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 344
Target Start/End: Original strand, 22110170 - 22110261
Alignment:
| Q |
253 |
gaggagataaaccggctcaaagccgagcttgtttccgttaaagctgaagcagggcagttaaaatctgcactggatggtgccgaggtaagata |
344 |
Q |
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||||||||||| |||||||||||| |||| | || | ||| |||||| || |||||| ||||||||| |||||| ||||||| ||||||| |
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| T |
22110170 |
gaggagataaatgggctcaaagccgcgcttatctctgccaaatctgaagtagagcagttgaaatctgcattggatgttgccgagataagata |
22110261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 344
Target Start/End: Complemental strand, 40584419 - 40584328
Alignment:
| Q |
253 |
gaggagataaaccggctcaaagccgagcttgtttccgttaaagctgaagcagggcagttaaaatctgcactggatggtgccgaggtaagata |
344 |
Q |
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| T |
40584419 |
gaggagataaatgggctcaaagccgcgcttatctctgccaaatctgaagtagagcagttgaaatctgcattggatgttgccgagataagata |
40584328 |
T |
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