View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19615_low_41 (Length: 390)
Name: NF19615_low_41
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_41 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 373
Target Start/End: Original strand, 14104923 - 14105286
Alignment:
| Q |
10 |
attattctggttctaattttctattggnnnnnnnnagagtaattttctattacttttattgttgctttgtttgatgtggcagcttgaccctaaatatatg |
109 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14104923 |
attattctggttctaattttctattggtttttt---gagtaattttctattatttttattgttgctttgtttgatgtggcagcttgaccctaaatatatg |
14105019 |
T |
|
| Q |
110 |
ggagttgatgtttcctctgggattccttgctgcaactgggtaattatgcatcttaactttccccttttgctactatttttgtgcatttacaacaac-aaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14105020 |
ggagttgatgtttcctctgggattccttgctgcaactgggtaattatgcatcttaactttccccttttgctactatttttgtgcatttacaacaacaaaa |
14105119 |
T |
|
| Q |
209 |
aattgaagtcataatatcatgcttcatatgtcttaaactacttgaatcaagacaaaaccatgaccaaaccaccaaaataatggaactattgt--aaaaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||| |
|
|
| T |
14105120 |
aattgaagtcataatatcatgcttcatatgtcttaaactacttgaatcaagacaaaaccatgaccaaaccaccaaaataatcgaactctagtaaaaaaat |
14105219 |
T |
|
| Q |
307 |
ccgttaaggttcagccgattgaactgttttattcgacttattttttaaaacgttgtctgtcgtctat |
373 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
14105220 |
cggttaaggttcagccgattgaactgttttattcgacttactttttaaaatgttgtctatcgtctat |
14105286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 14105316 - 14105392
Alignment:
| Q |
297 |
ttgtaaaaatccgttaaggttcagccgattgaactgttttattcgacttattttttaaaacgttgtctgtcgtctat |
373 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||||||| | |||||||||| |||||| |||||||| |
|
|
| T |
14105316 |
ttgtaaaaatcagttaaggttgaaccgattgaactgttttattcgactcaatttttaaaacattgtctatcgtctat |
14105392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University