View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19615_low_45 (Length: 376)
Name: NF19615_low_45
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_45 |
 | |
|
| [»] chr1 (5 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 154 - 376
Target Start/End: Original strand, 30325328 - 30325554
Alignment:
| Q |
154 |
tatatatacaccatcctcaacaactcaaccacccacattccattcccaaaatccaaaacact----gaatcaatggcttcaacaacacaagcactaataa |
249 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
30325328 |
tatatatacaccatcctcaacaattcaaccacccacattccattcccaaaatccaaaacactcactgaatcaatgggttcaacaacacaagcactaataa |
30325427 |
T |
|
| Q |
250 |
tgctggctttctcatacattttcttaacattcatccttctctggaattacaaaccacccattcatccaactgaacaaaaagcactctacaatgttctcaa |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30325428 |
tgctggctttctcatacattttcttaacattcatccttctctggaattacaaaccacccatacacccaaccgaacaaaaagcactctacaatgttctcaa |
30325527 |
T |
|
| Q |
350 |
ctccatcaacccagatttcccatggac |
376 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30325528 |
ctccatcaacccagatttcccatggac |
30325554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 196 - 376
Target Start/End: Original strand, 30337007 - 30337191
Alignment:
| Q |
196 |
ttcccaaaatccaaaacact----gaatcaatggcttcaacaacacaagcactaataatgctggctttctcatacattttcttaacattcatccttctct |
291 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| || |||||||||||||||| |||| ||| |||| |||||| |
|
|
| T |
30337007 |
ttcccaaaatccaaaacactcactgaatcaatgggttcaacaacacaagcactgataatacttgctttctcatacatttgcttatcatccatctttctct |
30337106 |
T |
|
| Q |
292 |
ggaattacaaaccacccattcatccaactgaacaaaaagcactctacaatgttctcaactccatcaacccagatttcccatggac |
376 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337107 |
ggaattacaaaccacccatacacccaactgaacaaaaagcactctacaatgttctcaactccatcaacccagatttcccatggac |
30337191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 30325249 - 30325301
Alignment:
| Q |
17 |
atactcctcaatcatttttaccattatatccatcaatttccgcatatcctccc |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30325249 |
atactcctcaatcatttttaccattatatccatcaatttccacatatcctccc |
30325301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 30343430 - 30343383
Alignment:
| Q |
315 |
ccaactgaacaaaaagcactctacaatgttctcaactccatcaaccca |
362 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30343430 |
ccaacagaacaaaaagcactctacaatgttctcaactccctcaaccca |
30343383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 30336850 - 30336885
Alignment:
| Q |
22 |
cctcaatcatttttaccattatatccatcaatttcc |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
30336850 |
cctcaatcatttttaccattatatccatcaatttcc |
30336885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University