View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_46 (Length: 375)
Name: NF19615_low_46
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 11639999 - 11639810
Alignment:
| Q |
17 |
cttttaacccatactttgagttcagggtctttgtcttccaatgaatcagctaacatcaagatggccttgtggcgttcgagttcgtctttgatgtattgaa |
116 |
Q |
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| T |
11639999 |
cttttaacccatactttgagttcagggtctttgtcttccaatgaatcagctaacatcaagatggacttgtggcgttcaagttcgtctttgatgtattgaa |
11639900 |
T |
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| Q |
117 |
catcttcacggactcctctttgtagatttacttcttcttgaagtaaccatgttagcttgtccaataaaaatgatactgaactctctgcca |
206 |
Q |
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| T |
11639899 |
catcttcacggactcctctttgtagatttacttcctcttgaagtaaccatgttagcttgtccaataaaaatgatactgaactgtctgcca |
11639810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 11621508 - 11621319
Alignment:
| Q |
17 |
cttttaacccatactttgagttcagggtctttgtcttccaatgaatcagctaacatcaagatggccttgtggcgttcgagttcgtctttgatgtattgaa |
116 |
Q |
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| T |
11621508 |
cttttaacccatactttgagttcagggtctttgtcttccattgaatcagctgccatcaagatggccttgtggcgttcgagttcgtcgttgatgtattgaa |
11621409 |
T |
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| Q |
117 |
catcttcacggactcctctttgtagatttacttcttcttgaagtaaccatgttagcttgtccaataaaaatgatactgaactctctgcca |
206 |
Q |
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| T |
11621408 |
catcttcacggacgcctctttgtagatttacctcttcttgaagtaaccaagttagcttctccaacaaaaatgatactgaactctctgcca |
11621319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 11606065 - 11606254
Alignment:
| Q |
17 |
cttttaacccatactttgagttcagggtctttgtcttccaatgaatcagctaacatcaagatggccttgtggcgttcgagttcgtctttgatgtattgaa |
116 |
Q |
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| T |
11606065 |
cttttaacccatactttgagttcaggatctttgtcttccaatgcatcatctctcgttaagatggcattgtggcgtttgagttcgtctttgatgtattgaa |
11606164 |
T |
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| Q |
117 |
catcttcacggactcctctttgtagatttacttcttcttgaagtaaccatgttagcttgtccaataaaaatgatactgaactctctgcca |
206 |
Q |
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| T |
11606165 |
catcttcacggacccctttttgtagaattacttcttcttgaagtaaccaactcagtttgtccaataaaaatgatactgaactatctgcca |
11606254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 267 - 367
Target Start/End: Complemental strand, 11639749 - 11639649
Alignment:
| Q |
267 |
gctctcgaaatgttaaaagttgcaaacaattgatgatttgatttctgagtattttctctcttttgatgataagttttgtagattccttttcttgctttgc |
366 |
Q |
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| T |
11639749 |
gctctcgaaatgttaaaagttgcaaacaattgatgatttgatttctgagtattttctctcttttgatgataagatttgtatattccttttcttgctttgc |
11639650 |
T |
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| Q |
367 |
t |
367 |
Q |
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| T |
11639649 |
t |
11639649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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