View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_48 (Length: 370)
Name: NF19615_low_48
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 7324775 - 7324435
Alignment:
| Q |
16 |
tttcttgttgaacaattactcataggtttgttggttgcttcttcgatcaacaacacactctcaacaactgtttttcgtttgtgtttccagtcttcttttc |
115 |
Q |
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| T |
7324775 |
tttcttgttgaacatttactcataggtttgttggttgcttcttcgatcaacaacacactctcaacaactgtttttcgtttgtgtttccagtcttcttttc |
7324676 |
T |
|
| Q |
116 |
ataaatcgtaatggcccgtttcgttgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgag |
215 |
Q |
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| T |
7324675 |
ataaatcgtaatggcccgtttcgttgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgag |
7324576 |
T |
|
| Q |
216 |
gatatgtgtaatcgatatcattatcaaggttagttactcagttaattgcaccttattcaattctaaagtgtgtttgttcttattttatgtattttcatgt |
315 |
Q |
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| T |
7324575 |
gatatgtgtaatcgatatcattatcaaggttagttactcagttaattgcaccttattcaattctaaagtgtgtttgttcttattttatgtattttcatgt |
7324476 |
T |
|
| Q |
316 |
ttgcttgttcatgattgcttatgtatatttttatgtttgtt |
356 |
Q |
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| T |
7324475 |
ttgcttgttcatgcttgcttatgtatatttttatgtttgtt |
7324435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 7243570 - 7243839
Alignment:
| Q |
12 |
tcactttcttgttgaacaattactcataggtttgttggttgcttcttcgatcaacaacacactctcaacaactgtttttcgtttgt--gtttccagtctt |
109 |
Q |
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| T |
7243570 |
tcactttcttgtcgaagaactactcttagctttgttggttgcttcttcgatcaacaacacactctcaagaactggttttcgtttgtacgtttcctctctt |
7243669 |
T |
|
| Q |
110 |
cttttcataaatcgtaatggcccgtttcgttgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacact |
209 |
Q |
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| T |
7243670 |
ctgactgcaaattgcaatggcttttttcattgacaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcactgttcttaacact |
7243769 |
T |
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| Q |
210 |
attgaggatatgtgtaatcgatatcattatcaaggttagttactcagttaattgcaccttattcaattct |
279 |
Q |
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| T |
7243770 |
attgaggatatgtgtaatcgattccattatcaaggttagtcactttgttaattgcaccttattcaattct |
7243839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 140 - 324
Target Start/End: Complemental strand, 7317869 - 7317684
Alignment:
| Q |
140 |
tgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgaggatatgtgtaatcgatatcattat |
239 |
Q |
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|||||||||||||||||| || ||||| | ||||||||| |||||||||||||||| | | || ||| |||||||||| |||||||||||||||||||| |
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| T |
7317869 |
tgacaacccatcattcccagccggtctcaaggttattgcaattgatcatgacatcactttcctcaactctattgaggagatgtgtaatcgatatcattac |
7317770 |
T |
|
| Q |
240 |
caaggttagttactcagttaattgcaccttattcaattctaaagtgtgtttgttctta-ttttatgtattttcatgtttgcttgtt |
324 |
Q |
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||||||| |||||| |||||||||||| ||||||||||||||||| | | |||||||| |||||||| |||||||||||| ||||| |
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| T |
7317769 |
caaggtttgttacttagttaattgcacattattcaattctaaagtttctatgttcttacttttatgttttttcatgtttgtttgtt |
7317684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 253
Target Start/End: Original strand, 8161916 - 8162044
Alignment:
| Q |
125 |
aatggcccgtttcgttgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgaggatatgtgt |
224 |
Q |
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|||| ||| |||| ||||||| ||||||||||| | ||||| ||| |||| |||||||||||||||| | | ||||| | || ||||| |||||| |
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| T |
8161916 |
aatgacccttttcattgacaaaccatcattcccagaaggtctctaggtccttgcaattgatcatgacatcactctccttaattccatcgaggagatgtgt |
8162015 |
T |
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| Q |
225 |
aatcgatatcattatcaaggttagttact |
253 |
Q |
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||||||| |||||||||||||| |||| |
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| T |
8162016 |
aatcgatgcaattatcaaggttaggtact |
8162044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 22766687 - 22766536
Alignment:
| Q |
123 |
gtaatggcccgtttcgttgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgaggatatgt |
222 |
Q |
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||||||||| |||| | ||||||||||||||||||| |||||| | |||||||| ||||||||||||| || | | |||||||| |||||||| |||| |
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| T |
22766687 |
gtaatggccgttttcatcgacaacccatcattccctgatggtctcaacgttattgcaattgatcatgacaccactttccttaacaccattgaggagatgt |
22766588 |
T |
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| Q |
223 |
gtaatcgatatcattatcaaggttagttactcagttaattgcaccttattca |
274 |
Q |
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||||||||| ||||||||||||||||||||| || |||| ||||||||||| |
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| T |
22766587 |
gtaatcgatgtcattatcaaggttagttacttggtaaattacaccttattca |
22766536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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