View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19615_low_49 (Length: 370)
Name: NF19615_low_49
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_49 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 44 - 352
Target Start/End: Complemental strand, 1680818 - 1680510
Alignment:
| Q |
44 |
agtcaacaaaatgatatattttcttagaggtcaacaaaatgatcttgaaaatnnnnnnntaaacgattaaaattaaacacacaacaatgttatataatga |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1680818 |
agtcaacaaaatgatatattttcttagaggtcaacaaaatgatcttgaaaataaaaaaataaatgattaaaattaaacacacaacaatgttatataatga |
1680719 |
T |
|
| Q |
144 |
tcacagctttgtctaaatttcttcgtatttcaaaacctctttctgttctatcacatatagagaaagaaaaaatggttcctctccaatcatttcatccata |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1680718 |
tcacagctttgtctaaatttcttcgtatttcaaaacctctttctgttctatcacatacagagaaagaaaaaatggttcctctccaatcatttaatccata |
1680619 |
T |
|
| Q |
244 |
cctatccatcattttactattgttccacctcttacatttttcatccattgaagcccaaaatgacgggttcactgttaaactcattcggaaatcatctcac |
343 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1680618 |
cctagccatcattttactattgttccacctcttacatttttcatccattgaagcccaaaatgacgggttcactgttaaactcattcggaagtcatctcac |
1680519 |
T |
|
| Q |
344 |
cgttcatct |
352 |
Q |
| |
|
| ||||||| |
|
|
| T |
1680518 |
ctttcatct |
1680510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 117 - 316
Target Start/End: Complemental strand, 1669199 - 1668998
Alignment:
| Q |
117 |
taaacacacaacaatgttatataatgatcacagctttgtctaaatttcttcgtatttcaaaacctctttctgttctatcacatatagagaaagaaaaa-- |
214 |
Q |
| |
|
|||||||| ||||||||| ||||| | |||||||||||| |||||||||| ||||| ||||||||||||| || ||| |||||||||| | ||| | |
|
|
| T |
1669199 |
taaacacaaaacaatgttgtataaaaaccacagctttgtccaaatttcttcatattttaaaacctctttctcttatatgacatatagaggacaaaagagc |
1669100 |
T |
|
| Q |
215 |
atggttcctctccaatcatttcatccatacctatccatcattttactattgttccacctcttacatttttcatccattgaagcccaaaatgacgggttca |
314 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||| ||||| ||||| ||||| | |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1669099 |
atggttcctctccaatcattttatccatacctagccataatttttctattattccatgttttacatttgtcatccattgaagcccaaaatgacgggttca |
1669000 |
T |
|
| Q |
315 |
ct |
316 |
Q |
| |
|
|| |
|
|
| T |
1668999 |
ct |
1668998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 169 - 348
Target Start/End: Complemental strand, 1661691 - 1661510
Alignment:
| Q |
169 |
tatttcaaaacctctttctgttctatcacatatagag--aaagaaaaaatggttcctctccaatcatttcatccatacctatccatcattttactattgt |
266 |
Q |
| |
|
||||| ||||||||||| | || |||||||||||||| || | || ||||||||||||||||||||| ||||||| || |||||||||| ||||| | |
|
|
| T |
1661691 |
tattttaaaacctctttatcttatatcacatatagaggacaaaagaacatggttcctctccaatcattttatccatatttagccatcatttttctattat |
1661592 |
T |
|
| Q |
267 |
tccacctcttacatttttcatccattgaagcccaaaatgacgggttcactgttaaactcattcggaaatcatctcaccgttc |
348 |
Q |
| |
|
|||| || ||| |||||| |||||||||||||||||||||||||||||| || ||||| |||| ||| ||||| ||||||| |
|
|
| T |
1661591 |
tccatcttttatattttttatccattgaagcccaaaatgacgggttcaccgtcaaactgcttcgtaaaacatctaaccgttc |
1661510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 1662161 - 1662105
Alignment:
| Q |
117 |
taaacacacaacaatgttatataatgatcacagctttgtctaaatttcttcgtattt |
173 |
Q |
| |
|
|||||||| || |||||||||||| | |||||||||||| |||||||||| ||||| |
|
|
| T |
1662161 |
taaacacaaaataatgttatataaaaaccacagctttgtccaaatttcttcatattt |
1662105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University