View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_57 (Length: 353)
Name: NF19615_low_57
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 121 - 335
Target Start/End: Complemental strand, 24579075 - 24578861
Alignment:
| Q |
121 |
cagcagcagcaaagtagtactcctaccaaaaaccaagagataatcaacaaagttttgccttctagctgtctttcaaaaacctctcaagagtcttcaaagg |
220 |
Q |
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| T |
24579075 |
cagcagcagcaaagtagtactcataccaaaaaacaagagataatcaacaaagttttgccttctagctgtcttccaaaaacctctcaggagtcttcaaagg |
24578976 |
T |
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| Q |
221 |
aagagaagactgaaatttctgaggtaattgatgtttctaacaataacaataacagtgcatgttcaacaccaaaaggtcagaaatataggataccagagat |
320 |
Q |
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| T |
24578975 |
aagagaagactgaaatttctgaggtaattgatgtttctaacagtaacaataacagtgcatgttcaacaccaaaaggtcagaaatataggataccagagat |
24578876 |
T |
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| Q |
321 |
ttcaacatgtcctcc |
335 |
Q |
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| T |
24578875 |
ttcaacatgtcctcc |
24578861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 24579183 - 24579139
Alignment:
| Q |
16 |
atggccccttctggaagaacagcatcaaacaaaatctcaaggacc |
60 |
Q |
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| T |
24579183 |
atggccccttctggaagaacagcatcaaacaaaatctcaaggacc |
24579139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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