View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_59 (Length: 343)
Name: NF19615_low_59
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 21540874 - 21540563
Alignment:
| Q |
16 |
attggtgattttgcttataaggggttaatcaatggtattgaggttatgataaagaggatgagatttgaagacactagtgaggtaattgatttacattcaa |
115 |
Q |
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| T |
21540874 |
attggtgattttgcttataaggggttaatcaatggtattgaggttatgataaagaggatgagatttgaagacactagtgaggtaattgatttacattcaa |
21540775 |
T |
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| Q |
116 |
gaatcaatcacattaatattgtgaatttaattggtgtttgttatggtgagagtgatttaatttcatggtcttatttagtttttgagttacctaaaaatgg |
215 |
Q |
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| T |
21540774 |
gaatcaatcacattaatattgtgaatttaattggtgtttgttatggtgagagtgatttaatttcatggtcttatttagtttttgagttacctaaaaatgg |
21540675 |
T |
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| Q |
216 |
ttgcttaagggattgtttaatggatccatgcaatactttaaattggcatagaaggacacaaatagtatttgacatagcaacatgtctttactatttacat |
315 |
Q |
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| T |
21540674 |
ttgcttaagggattgtttaatggatccatgcaatactttaaattggcatagaaggacacaaatagtatttgacatagcaacatgtctttactatttacat |
21540575 |
T |
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| Q |
316 |
tattgttctttt |
327 |
Q |
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| T |
21540574 |
tattgttctttt |
21540563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 33040899 - 33040822
Alignment:
| Q |
175 |
atttcatggtcttatttagtttttgagttacctaaaaatggttgcttaagggattgtttaatggatccatgcaatact |
252 |
Q |
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| T |
33040899 |
atttcatagtctcatttagtttttgagttacctaaaaatggttgcataagggaatgtatattggatccatgcaatact |
33040822 |
T |
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