View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_60 (Length: 339)
Name: NF19615_low_60
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 7554108 - 7554428
Alignment:
| Q |
1 |
aacactacagagaatacaaagttataacattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtnnnnnnngaaacatttgac |
100 |
Q |
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| T |
7554108 |
aacactacagagaatacaaagttataacattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtaaaaaaagaaaaatttgac |
7554207 |
T |
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| Q |
101 |
attttagagtttgaacttcggcagagcatttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttcgtaactccaatcccatg |
200 |
Q |
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| T |
7554208 |
attttagagtttgaacttcggcagagcatttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttcgtaactccaatcccatg |
7554307 |
T |
|
| Q |
201 |
caggcggagcttctatccttctcaatgatggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattctgcaaattaatctcttt |
300 |
Q |
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| T |
7554308 |
caggcggagcttctatccttctcaatgatggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattctgcaaattaatctcttt |
7554407 |
T |
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| Q |
301 |
gagtagcgtgcagttttctac |
321 |
Q |
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| T |
7554408 |
gagtagcgtgcagttttctac |
7554428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 3438824 - 3438786
Alignment:
| Q |
219 |
ttctcaatgatggccttgaaactaccatctcgtcaacaa |
257 |
Q |
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| T |
3438824 |
ttctcaatgatggctttgaaaataccatctcgtcaacaa |
3438786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 9411195 - 9411235
Alignment:
| Q |
221 |
ctcaatgatggccttgaaactaccatctcgtcaacaatatt |
261 |
Q |
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| T |
9411195 |
ctcaatgacggccttgaaaataccatatcgtcaacaatatt |
9411235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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