View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_62 (Length: 329)
Name: NF19615_low_62
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 33681351 - 33681509
Alignment:
| Q |
20 |
cggttcacaatattttgcgtagacatccttcgatcaaactgtttggtgcaccgggtaaa----gatattctattttctatattttgtttttgcaattact |
115 |
Q |
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| T |
33681351 |
cggttcacaatattttgcgtagacatccttcgatcaaactgtttggtgcaccgggtaaattaagatattctattttctatattttgtttttgcaattact |
33681450 |
T |
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| Q |
116 |
tcaatagtaaaatttgtttcctggattactttatcattggaaatgttaatggagatcac |
174 |
Q |
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| T |
33681451 |
tcaatagtaaaatttgtttcctggattactttatcattggaaatgttaatggagatcac |
33681509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 33681571 - 33681660
Alignment:
| Q |
171 |
tcactataaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttatatttagaattattgcagttt |
260 |
Q |
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| T |
33681571 |
tcactataaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttatatttagaattattgcagttt |
33681660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 33666750 - 33666878
Alignment:
| Q |
21 |
ggttcacaatattttgcgtagacatccttcgatcaaactgtttggtgcaccgggtaaagatattctattttctatattttgtttttgcaattacttcaat |
120 |
Q |
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| T |
33666750 |
ggttcacaatattttgcgtagacatccttcgatcaa-ctgtttggtgcatcgggtaaagatagtcttgtgtctatattttgtttttgcaatcacttcatt |
33666848 |
T |
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| Q |
121 |
agtaaaatttgtttcctggattactttatc |
150 |
Q |
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| T |
33666849 |
agtaaattttgtttcctggattactatatc |
33666878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 260 - 325
Target Start/End: Original strand, 33681703 - 33681768
Alignment:
| Q |
260 |
ttaaatagttgcatacttgcgtgtttgtgtattttgaattgtttccatattgtacctatgcttctc |
325 |
Q |
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| T |
33681703 |
ttaaatagttgcatacttgcgtgtttgtgtattttgaattgtttccattttgtatctatgtttctc |
33681768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 33666966 - 33667029
Alignment:
| Q |
177 |
taaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttat |
240 |
Q |
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| T |
33666966 |
taaacttttccatttagaaaatgatctatgctgtgttcaggaaatacttttctattcatcttat |
33667029 |
T |
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