View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_63 (Length: 328)
Name: NF19615_low_63
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 35487105 - 35487383
Alignment:
| Q |
17 |
catagggccggagagtcttgtttttgatagtcatggtggaggtccatacaccggcgtggcggatggtcggattttgaagtgggaagggaagaaacgtggt |
116 |
Q |
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| T |
35487105 |
catagggccggagagtcttgtttttgatagtcatggtggaggtccatacaccggcgtggcggatggtcggattttgaagtggaaaggaaagaaacgtggt |
35487204 |
T |
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| Q |
117 |
tggactgaatttgctgtcacgagttccaataggtaatagtaatacccatttggtgtttccactcttcaaaattccttctctattattctttctttggtac |
216 |
Q |
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| T |
35487205 |
tggactgaatttgctgtcacgagttccaataggtaatagtaatacccatttggtgtttccactcttcaaaattccttctctattattctttctttggtac |
35487304 |
T |
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| Q |
217 |
tatatatctatttttacttacatctcgtttagcttattagtaagacttaaattcggtttatagttttctcgtaagtggt |
295 |
Q |
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| T |
35487305 |
tatatatctatttttacttacatctagtttagcttattagtaagacttaaattcggtttatagttttctcgtaagtggt |
35487383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 35509503 - 35509678
Alignment:
| Q |
21 |
gggccggagagtcttgtttttgatagtcatggtggaggtccatacaccggcgtggcggatggtcggattttgaagtgggaagggaagaaacgtggttgga |
120 |
Q |
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| T |
35509503 |
gggccggagagtcttgtttttgatagtaatggtgatgggccgtacaccggcgtggcggatggtcggattttaaaatgggaaggagaggaacgtggttgga |
35509602 |
T |
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| Q |
121 |
ctgaatttgctgtcacgagttccaataggtaatagtaatacccattt-ggtgtttccactcttcaaaattccttct |
195 |
Q |
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| T |
35509603 |
ctgaatttgctgtcaccagctccaataggtaatggtaatattcatttgggtgtttccacatttcaaaattctttct |
35509678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 35501591 - 35501722
Alignment:
| Q |
21 |
gggccggagagtcttgtttttgatagtcatggtggaggtccatacaccggcgtggcggatggtcggattttgaagtgggaagggaagaaacgtggttgga |
120 |
Q |
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||||||||||||||||||||||||||| |||||| ||||| |||||||| || || |||||| ||||||||||||||||||| || |||||||||||| |
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| T |
35501591 |
gggccggagagtcttgtttttgatagtaatggtgatggtccgtacaccggtgtagcagatggtaggattttgaagtgggaaggtgaggaacgtggttgga |
35501690 |
T |
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| Q |
121 |
ctgaatttgctgtcacgagttccaataggtaa |
152 |
Q |
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| T |
35501691 |
ctcaatttgctgtcaccagttccaataggtaa |
35501722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 40157115 - 40157296
Alignment:
| Q |
21 |
gggccggagagtcttgtttttgatagtcatggtggaggtccatacaccggcgtggcggatggtcggattttgaagtgggaagggaagaaacgtggttgga |
120 |
Q |
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||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||||| |
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| T |
40157115 |
gggccggagagtcttgtttttgatagtcacgacgaaggaccatacaccggcgtggcggatggtcggattttgaagtatgaaggggaggaacgaggttgga |
40157214 |
T |
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| Q |
121 |
ctgaatttgctgtcacgagttccaataggtaatagta--atacccatttggtgtttccactcttcaaaattccttctctatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| ||| |||||| |||| |||| |
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| T |
40157215 |
ctgaatttgctgtcacgagttccaataggtaatagaaatatacacatttggtgtttccacgtttctaaattctttctttatt |
40157296 |
T |
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