View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_64 (Length: 324)
Name: NF19615_low_64
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 2 - 317
Target Start/End: Original strand, 39161644 - 39161960
Alignment:
| Q |
2 |
gtttccatattttttgccctgctttgttatatcagcttttgcatttgtagtagcaattgcctgcatttggttaccggtatgaatcttaatttcctcagcc |
101 |
Q |
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| T |
39161644 |
gtttccatattttttgccctgctttgttatatcagcttttgcatttgcagtagcaattgcctgcatttggttaccggtatgaatcttaatttcctcagcc |
39161743 |
T |
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| Q |
102 |
atatatatgtagtgcagctatatatgtatatgtgtgcgtgcatataactgcaggaaacacttcaataccataatggcagcaaggagtccactgacaatgt |
201 |
Q |
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| T |
39161744 |
atatatatgtagtgcggctatatatgtatatgtgtgcgtgcatataactgcaggaaacacttcactaccataatggcagcaaggagtccactgacaatgt |
39161843 |
T |
|
| Q |
202 |
ggaagctgcaaaagttggaagcagtgagag-aagaaagataagatgattgaaaaagatgatagcctatttctaaattggcctttcatgtcatctattatt |
300 |
Q |
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| T |
39161844 |
ggaagctgcagaagttggaagcagtgagagtaagaaagataagatgattgaaaaagatgaaagcctatttctaaattggcctttcatgtcatctattatt |
39161943 |
T |
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| Q |
301 |
gtttactgtctctgctc |
317 |
Q |
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|||||| |||||||||| |
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| T |
39161944 |
gtttacggtctctgctc |
39161960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 2607466 - 2607518
Alignment:
| Q |
30 |
atatcagcttttgcatttgtagtagcaattgcctgcatttggttaccggtatg |
82 |
Q |
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| T |
2607466 |
atatcagcttttgcgtttgtggtagcaattgcctgcatctggcttccggtatg |
2607518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 2622245 - 2622302
Alignment:
| Q |
31 |
tatcagcttttgcatttgtagtagcaattgcctgcatttggttaccggtatgaatctt |
88 |
Q |
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| T |
2622245 |
tatcagctatggcatttgttgtagcgatttcctgcatttggctaccggtatgtatctt |
2622302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 26369771 - 26369719
Alignment:
| Q |
30 |
atatcagcttttgcatttgtagtagcaattgcctgcatttggttaccggtatg |
82 |
Q |
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|||||||||||||| |||| ||||||||||||||||| ||| | |||||||| |
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| T |
26369771 |
atatcagcttttgcgtttgcggtagcaattgcctgcatctggcttccggtatg |
26369719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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