View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_65 (Length: 324)
Name: NF19615_low_65
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 24 - 307
Target Start/End: Complemental strand, 6381052 - 6380768
Alignment:
| Q |
24 |
aaagagaatattacaaaaagagacaagattatttcgctagagaataacatcaactaagaaaataatttagattgtttattaaattgaaagatcaaattca |
123 |
Q |
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| T |
6381052 |
aaagagaatattacaaaaagagacaagattatttcgcaagagaataacatcaactaagaaaataatttagattgtttattaaattgaaagatcaaattca |
6380953 |
T |
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| Q |
124 |
atttagaaggaagtaaaatataaaccatgatatagttttaatggtctacctttggtacttcatcaatttga-ttgtatgaccggtcattattttaattat |
222 |
Q |
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| T |
6380952 |
atttagaaggaagtaaaatataaaccatgatatagttttactggtctacctttggtacttcatcaatttgatttgtatgaccggtcattattttaattat |
6380853 |
T |
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| Q |
223 |
aagatcttcgtcttcaatgccatcttcacctttatcgtcgtcaagtgttatgatattcagacaagaattaacttgacccaaaatt |
307 |
Q |
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| T |
6380852 |
aagatcttcatcttcaatgtcatcttcacctttatcgtcgtcaagtgttatgatattcagacaagaattaacttgacccaaaatt |
6380768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 307
Target Start/End: Original strand, 5471328 - 5471553
Alignment:
| Q |
83 |
aaataatttagattgtttattaaattgaaagatcaaattcaatttagaaggaagtaaaatataaaccatgatatagttttaatggtctacctttggtact |
182 |
Q |
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| T |
5471328 |
aaataatttatatggtttattaaattgaaagctcaaattcaatttataatgaattaaaatttaaataaagatataatattaatgatatacctttggtact |
5471427 |
T |
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| Q |
183 |
tcatcaatttga-ttgtatgaccggtcattattttaattataagatcttcgtcttcaatgccatcttcacctttatcgtcgtcaagtgttatgatattca |
281 |
Q |
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| T |
5471428 |
ttatcaattcgatttgtatgattcatgattaattgaattgtaagatcttcatcttcaatgtcatcttcaccttcatcgtcatcatgtgttaggaaattta |
5471527 |
T |
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| Q |
282 |
gacaagaattaacttgacccaaaatt |
307 |
Q |
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| T |
5471528 |
gacagacactgacttgacccaaaatt |
5471553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 307
Target Start/End: Original strand, 6367876 - 6367966
Alignment:
| Q |
217 |
aattataagatcttcgtcttcaatgccatcttcacctttatcgtcgtcaagtgttatgatattcagacaagaattaacttgacccaaaatt |
307 |
Q |
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| T |
6367876 |
aattataagatcttcatcttcaatgtcatcttcaccttcatcatcatcaagcgttatgaaatttagacagaaattgtcttgacccaaaatt |
6367966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 275
Target Start/End: Original strand, 6399543 - 6399658
Alignment:
| Q |
161 |
ttaatggtctacctttggtacttcatcaatttgat-tgtatgaccggtcattattttaattataagatcttcgtcttcaatgccatcttcacctttatcg |
259 |
Q |
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| T |
6399543 |
ttaatggtatacctttggtactttgtcgattggatctgtatgattcatgattaattgaattacaagatcttcatcttcaatgtcatctccaccttcatcg |
6399642 |
T |
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| Q |
260 |
tcgtcaagtgttatga |
275 |
Q |
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| T |
6399643 |
tcatcaagtgttatga |
6399658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 6384599 - 6384542
Alignment:
| Q |
84 |
aataatttagattgtttattaaattgaaagatcaaattcaatttagaaggaagtaaaa |
141 |
Q |
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| T |
6384599 |
aataatttatatggtttattaaattgaaagatcaacttcaatttataatgcagtaaaa |
6384542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 6367752 - 6367795
Alignment:
| Q |
98 |
tttattaaattgaaagatcaaattcaatttagaaggaagtaaaa |
141 |
Q |
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| T |
6367752 |
tttattaaattgaaagctcaaattcaatttataatgaagtaaaa |
6367795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 12493221 - 12493131
Alignment:
| Q |
217 |
aattataagatcttcgtcttcaatgccatcttcacctttatcgtcgtcaagtgttatgatattcagacaagaattaacttgacccaaaatt |
307 |
Q |
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| T |
12493221 |
aattacaagatcttcaccttcaatgtcatctccaccttcatcgtcatcatgtgttatgaaattttgacaaaaactgacttgacccaaaatt |
12493131 |
T |
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