View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19615_low_7 (Length: 644)

Name: NF19615_low_7
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19615_low_7
NF19615_low_7
[»] chr8 (9 HSPs)
chr8 (18-639)||(18314418-18315039)
chr8 (61-409)||(18318652-18319002)
chr8 (44-174)||(17643196-17643326)
chr8 (288-418)||(14004069-14004199)
chr8 (44-177)||(17635899-17636032)
chr8 (37-404)||(32151641-32152010)
chr8 (284-469)||(17642884-17643069)
chr8 (375-483)||(17635591-17635699)
chr8 (378-419)||(34935986-34936027)
[»] chr5 (14 HSPs)
chr5 (525-639)||(9849364-9849478)
chr5 (525-610)||(9844638-9844723)
chr5 (126-224)||(28673469-28673567)
chr5 (291-396)||(28695545-28695650)
chr5 (284-351)||(28673340-28673407)
chr5 (282-342)||(29021717-29021777)
chr5 (605-639)||(9843238-9843272)
chr5 (126-224)||(28695719-28695817)
chr5 (128-181)||(28532574-28532627)
chr5 (128-224)||(29021561-29021657)
chr5 (36-90)||(32268231-32268285)
chr5 (36-90)||(41886925-41886979)
chr5 (271-339)||(28662036-28662104)
chr5 (584-639)||(40280424-40280480)
[»] chr1 (5 HSPs)
chr1 (525-639)||(25189650-25189764)
chr1 (375-431)||(19467418-19467474)
chr1 (43-203)||(7554873-7555034)
chr1 (288-434)||(7555124-7555270)
chr1 (44-164)||(19467702-19467822)
[»] chr7 (6 HSPs)
chr7 (525-639)||(8368389-8368505)
chr7 (375-465)||(10169003-10169093)
chr7 (375-465)||(10176528-10176618)
chr7 (275-407)||(7977786-7977918)
chr7 (375-426)||(10615726-10615777)
chr7 (449-490)||(15091527-15091568)
[»] chr2 (2 HSPs)
chr2 (60-190)||(32785297-32785427)
chr2 (378-416)||(1036613-1036651)
[»] chr4 (25 HSPs)
chr4 (43-434)||(8186343-8186736)
chr4 (43-165)||(7308233-7308355)
chr4 (284-400)||(7225179-7225294)
chr4 (133-224)||(532589-532680)
chr4 (38-173)||(21833554-21833689)
chr4 (375-469)||(553772-553866)
chr4 (278-327)||(1547794-1547843)
chr4 (277-338)||(2367988-2368049)
chr4 (277-338)||(2373554-2373615)
chr4 (567-639)||(23872037-23872109)
chr4 (293-338)||(5106639-5106684)
chr4 (277-338)||(12124507-12124568)
chr4 (38-86)||(1601177-1601225)
chr4 (43-246)||(7225324-7225528)
chr4 (288-404)||(1755479-1755595)
chr4 (293-338)||(2518911-2518956)
chr4 (285-338)||(2621488-2621541)
chr4 (47-183)||(641690-641826)
chr4 (288-336)||(2363162-2363210)
chr4 (375-432)||(661871-661928)
chr4 (293-338)||(2477261-2477306)
chr4 (293-338)||(2533991-2534036)
chr4 (379-416)||(55907677-55907714)
chr4 (297-337)||(2467224-2467264)
chr4 (294-338)||(5035301-5035345)
[»] scaffold0655 (1 HSPs)
scaffold0655 (525-594)||(94-163)
[»] chr6 (5 HSPs)
chr6 (47-225)||(9411810-9411988)
chr6 (45-181)||(6588521-6588657)
chr6 (375-426)||(6593923-6593974)
chr6 (287-385)||(6432758-6432856)
chr6 (288-328)||(9412050-9412090)
[»] scaffold1155 (1 HSPs)
scaffold1155 (379-483)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (379-483)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (379-483)||(30584-30688)
[»] chr3 (4 HSPs)
chr3 (37-171)||(513927-514061)
chr3 (36-147)||(51763672-51763783)
chr3 (277-328)||(51763489-51763540)
chr3 (371-484)||(51120590-51120703)


Alignment Details
Target: chr8 (Bit Score: 555; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 18 - 639
Target Start/End: Complemental strand, 18315039 - 18314418
Alignment:
Q  18 cttcctgttcaatgtaactggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaa 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18315039 cttcctgttcaaagtaactggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaa 18314940  T
Q  118 tatgattgcctctttgagaagcttacagttcttgaacaagtggaaaagtgattgatcgttgatgtagtaatgatcagcgaaattaaactttcggagtttg 217  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18314939 tatgattgtctcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatgtagtaatgatcagcgaaattaacctttcggagtttg 18314840  T
Q  218 aaaagtgtgatgaaagaacctctattccattgagta-gctttcatgattttttcactctttggggtaactaaggtcgagttcttcgagcaaagggaaaca 316  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18314839 aaaagtgtgatgaaagaacctctattccattgagtaagctttcatgattttttaactctttggggtaactaaggtcgagttcttcgagcaaagggaaaca 18314740  T
Q  317 atcagcaatgaggaagagatcagtgccatgaagagattgaacgtgagaacatgagagtgaggtcaaagttgtaatattttgagagaaaactcgtaagcca 416  Q
    |||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18314739 atcagcaatgaggaagagatcagtgccatggagagattgaatgtaagaacatgagagtgaggtcaaagttgtaatattttgagagaaaactcgtaagcca 18314640  T
Q  417 tttgcgggaatggtgggtagacaggagagatcgagtgatttgagtttctatgggaaaagagagatttgacagaggatcgtgttgaggtcatcttcatagc 516  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18314639 tttgcgggaatggtgggttgacaggagagatcgagtcatttgagtttcaatgggaaaagagagatttgacagaggatcgtgttgaggtcat-ttcatagc 18314541  T
Q  517 acgtgaggtattgcatcacgaagaaaaacagaaagatgaaaatcttaaagtgtaatagcttgtctgacaagtaactagcttagaatagtttagttagtta 616  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18314540 acgtgaggtattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagcttgtctgacaagtaactagcttagaatagtttagttagtta 18314441  T
Q  617 cagagttattatcctatgcttct 639  Q
    |||||||||||||||||||||||    
T  18314440 cagagttattatcctatgcttct 18314418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 61 - 409
Target Start/End: Complemental strand, 18319002 - 18318652
Alignment:
Q  61 tggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgagaagcttacagttcttgaacaagtgg 160  Q
    |||||||||| |||| | | ||||||||||  | ||||||||||||| ||||| || |||||| ||||||| ||||||||| ||||||||||||||||||    
T  18319002 tggtctctcatggagggaagaagcaataccatcattggttatttgatcacagtcaagtatgatggcctcttcgagaagcttccagttcttgaacaagtgg 18318903  T
Q  161 aaaagtgattgatcgttgatgtagtaatgatcagcgaaattaaactttcggagtttgaaaagtg-tgatgaaagaacctctattccattgagt-agcttt 258  Q
    | ||| ||||||||| |||| |||| |||| ||| || || || ||||||||||||| |||||| | | ||||||||||||| ||||| |||| ||||||    
T  18318902 ataagcgattgatcggtgatatagtgatgaccagtgagatcaacctttcggagtttggaaagtgctaaagaaagaacctctactccatcgagtaagcttt 18318803  T
Q  259 catgattttttcactctttggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatgaagagattgaac 358  Q
    ||| || | || |   | ||||| ||  || || ||||||||| || |||||||||||||| |||||||||||||||| ||||| ||  ||| ||||||     
T  18318802 cattatctattaagaatatgggggaaggaatgttgagttcttcaaggaaagggaaacaatctgcaatgaggaagagataagtgctattgagacattgaag 18318703  T
Q  359 gtgagaacatgagagtgaggtcaaagttgtaatattttgagagaaaactcg 409  Q
    |  |||||||| ||||||||||||||||||||||||||   ||||||||||    
T  18318702 gccagaacatgtgagtgaggtcaaagttgtaatatttttgcagaaaactcg 18318652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 17643326 - 17643196
Alignment:
Q  44 gataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgagaagcttac 143  Q
    |||||||||||||| ||||| |||||||| |||||| |||||| ||| ||||||||||||| || ||||   |||||||| |||||||  ||| ||||      
T  17643326 gataaagacctcaacgttggcctctcacgtagagcagaagcaacaccagcgttggttatttcatcacagcgcaatatgatggcctcttctagatgcttta 17643227  T
Q  144 agttcttgaacaagtggaaaagtgattgatc 174  Q
    ||||||||||||||| || ||| ||||||||    
T  17643226 agttcttgaacaagttgagaagcgattgatc 17643196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 288 - 418
Target Start/End: Original strand, 14004069 - 14004199
Alignment:
Q  288 aggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatgaagagattgaacgtgagaacatgagagtgaggtcaaagttg 387  Q
    |||||||||||||| |||||||| |||||||||||||||||   ||||||||||| || |||||| | || ||  |||||    ||||||||||||||||    
T  14004069 aggtcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttg 14004168  T
Q  388 taatattttgagagaaaactcgtaagccatt 418  Q
    |||| || ||||||||| |||| || |||||    
T  14004169 taatgttctgagagaaagctcgcaaaccatt 14004199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 17636032 - 17635899
Alignment:
Q  44 gataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgagaagcttac 143  Q
    |||||||||||||| ||| |||||||| | |||||| | |||||||| || ||||||||||| ||||| |  |||||||| || ||||  |||| ||| |    
T  17636032 gataaagacctcaatgtttgtctctcaagaagagcagaggcaataccggcattggttatttgttgacaattcaatatgatggcttcttcaagaaacttcc 17635933  T
Q  144 agttcttgaacaagtggaaaagtgattgatcgtt 177  Q
    | ||||||||||||| || ||| |||||||||||    
T  17635932 aattcttgaacaagttgagaagagattgatcgtt 17635899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 37 - 404
Target Start/End: Original strand, 32151641 - 32152010
Alignment:
Q  37 ggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgaga 136  Q
    ||||| ||| |||||||||||||||| ||| |||||||| | |  ||||||||| |  ||||| |||  || ||| | |  |||||   |||||| ||||    
T  32151641 ggaaaaggaaaaagacctcaaagttgatctatcacggagcgaatgagcaataccaggcttggtaattccataacaatcacgtatgacgacctcttcgaga 32151740  T
Q  137 agcttacagttcttgaacaagtggaaaagtgattgatcgttgatgtagtaatgatcagcgaaattaaactttcggagtttgaaaagtgt-gatgaaagaa 235  Q
    ||||| ||||| ||||||||||||||||| |||||||| || || |||| ||||   | || ||||| ||| | ||||||  ||||||  | |||||||     
T  32151741 agcttccagttgttgaacaagtggaaaagcgattgatctttaatatagtgatgacttgtgagattaaccttccagagtttataaagtgccgttgaaagag 32151840  T
Q  236 cctctattccattgagta-gctttcatgattttttcactctttggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagag 334  Q
    |||||| ||||||| ||| ||||| || ||| | | ||  | |||| | |   ||||| |||||||||||||||||||||||||| ||||||||||| |     
T  32151841 cctctactccattgtgtaagcttttataattctctaacattatgggcttagagaggtcaagttcttcgagcaaagggaaacaatcggcaatgaggaacaa 32151940  T
Q  335 atcagtgccatgaagagattgaacgtgagaacatgagagtgaggtcaaagttgtaatattttgagagaaa 404  Q
     || |||||||  | ||| | ||   ||||||| | ||| ||||||||||||||||| ||||| ||||||    
T  32151941 gtcggtgccattgaaagaataaatacgagaacaagtgagagaggtcaaagttgtaatgttttgggagaaa 32152010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 284 - 469
Target Start/End: Complemental strand, 17643069 - 17642884
Alignment:
Q  284 actaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatgaagagattgaacgtgagaacatgagagtgaggtcaaa 383  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||||   || |||| || | | |||  |   | ||| ||||| | ||| |||||||||    
T  17643069 actaagatcgagttcttctagcaaagggaaacaatcagcgatgagggtaaggtcagagctacggagatttcccatgtgggaacaagtgagagaggtcaaa 17642970  T
Q  384 gttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggtagacaggagagatcgagtgatttgagtttctatgg 469  Q
    ||||||||||| || |||||| || |||| ||||| | |||||||||| |  |   |||||||| ||||||| |||||||| ||||    
T  17642969 gttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagtttcaatgg 17642884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 375 - 483
Target Start/End: Complemental strand, 17635699 - 17635591
Alignment:
Q  375 gaggtcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggtagacaggagagatcgagtgatttgagtttctatgggaaaa 474  Q
    ||||||||||||||||||||  | |||||| ||||||| ||||| |  ||||||||| || |   ||| |||| ||||||| |||||||| |||| |||     
T  17635699 gaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagtttcaatggaaaag 17635600  T
Q  475 gagagattt 483  Q
    |||||||||    
T  17635599 gagagattt 17635591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 419
Target Start/End: Complemental strand, 34936027 - 34935986
Alignment:
Q  378 gtcaaagttgtaatattttgagagaaaactcgtaagccattt 419  Q
    |||||||||||||||||||| ||||||||||| || ||||||    
T  34936027 gtcaaagttgtaatattttgtgagaaaactcgcaaaccattt 34935986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 525 - 639
Target Start/End: Complemental strand, 9849478 - 9849364
Alignment:
Q  525 tattgcatcacgaagaaaaacagaaagatgaaaatcttaaagtgtaatagcttgtctgacaagtaactagcttagaatagtttagttagttacagagtta 624  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  9849478 tattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagtttgtatgacaaataactaacttagaatagtttagttagttacagagtta 9849379  T
Q  625 ttatcctatgcttct 639  Q
    |||||||||||||||    
T  9849378 ttatcctatgcttct 9849364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 525 - 610
Target Start/End: Complemental strand, 9844723 - 9844638
Alignment:
Q  525 tattgcatcacgaagaaaaacagaaagatgaaaatcttaaagtgtaatagcttgtctgacaagtaactagcttagaatagtttagt 610  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||| ||||||||||||||||    
T  9844723 tattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagtttgtatgacaaataactaacttagaatagtttagt 9844638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 28673567 - 28673469
Alignment:
Q  126 cctctttgagaagcttacagttcttgaacaagtggaaaagtgattgatcgttgatgtagtaatgatcagcgaaattaaactttcggagtttgaaaagtg 224  Q
    |||||| ||||||||||||||| || | ||| |||||||||||||| ||||||||||||| ||||| || || ||||| ||| | ||||||||||||||    
T  28673567 cctcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatgtagtgatgatgagagagattaaccttgcagagtttgaaaagtg 28673469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 396
Target Start/End: Complemental strand, 28695650 - 28695545
Alignment:
Q  291 tcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatgaagagattgaacgtgagaacatgagagtgaggtcaaagttgtaa 390  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||| |||| |  || ||| ||||| | ||| ||||||| ||||||||    
T  28695650 tcgagttcttcgggcaaagggaagcaatcagcaatgaagaagagatcagtgctatggagagttgcaaggtgggaacaagtgagagaggtcatagttgtaa 28695551  T
Q  391 tatttt 396  Q
    | ||||    
T  28695550 tgtttt 28695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 28673407 - 28673340
Alignment:
Q  284 actaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatgaagag 351  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |||| ||| ||||    
T  28673407 actaagatcgagttcttcgagcaaagggaagcaatcagcaatgaagaagagatcggtgctatggagag 28673340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 29021717 - 29021777
Alignment:
Q  282 taactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgc 342  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| || ||||||| |||||    
T  29021717 taactaagatcgagttcttcgagcaaagggaagcaatcagcaataagaaagagatgagtgc 29021777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 605 - 639
Target Start/End: Complemental strand, 9843272 - 9843238
Alignment:
Q  605 tttagttagttacagagttattatcctatgcttct 639  Q
    |||||||||||||||||||||||||||||||||||    
T  9843272 tttagttagttacagagttattatcctatgcttct 9843238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 28695817 - 28695719
Alignment:
Q  126 cctctttgagaagcttacagttcttgaacaagtggaaaagtgattgatcgttgatgtagtaatgatcagcgaaattaaactttcggagtttgaaaagtg 224  Q
    |||||| ||||||||| ||||| || | |||||||||||||| |||  |||||||||||| ||||  || || ||||| ||| | ||||||||||||||    
T  28695817 cctcttcgagaagcttgcagttgtttatcaagtggaaaagtggttggccgttgatgtagtgatgacgagagagattaaccttgcagagtttgaaaagtg 28695719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 28532574 - 28532627
Alignment:
Q  128 tctttgagaagcttacagttcttgaacaagtggaaaagtgattgatcgttgatg 181  Q
    |||| |||||||||||||||  |||||||||||||||||||||| | |||||||    
T  28532574 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 28532627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 29021561 - 29021657
Alignment:
Q  128 tctttgagaagcttacagttcttgaacaagtggaaaagtgattgatcgttgatgtagtaatgatcagcgaaattaaactttcggagtttgaaaagtg 224  Q
    |||| ||||||||||||||| || |  ||||||||||||||||| |||||||| ||| |||||  || || || || ||| |||||||| |||||||    
T  29021561 tcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgatatagcaatgacgagagagatcaaccttgcggagtttaaaaagtg 29021657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 32268231 - 32268285
Alignment:
Q  36 tggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacc 90  Q
    |||||| ||||| ||||||||| ||||||||||||||||| |||  |||||||||    
T  32268231 tggaaaaggatacagacctcaatgttggtctctcacggagggcattagcaatacc 32268285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 41886979 - 41886925
Alignment:
Q  36 tggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacc 90  Q
    ||||||||||||||||| |||| |||||||| || ||||||||| || |||||||    
T  41886979 tggaaatggataaagacttcaatgttggtctttcccggagagcagaaacaatacc 41886925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 28662104 - 28662036
Alignment:
Q  271 actctttggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcag 339  Q
    |||||| ||| | |||||| ||||||||||||||||||||||| ||||  | |||||| || |||||||    
T  28662104 actcttcgggatcactaagatcgagttcttcgagcaaagggaagcaatagggaatgagaaaaagatcag 28662036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 639
Target Start/End: Original strand, 40280424 - 40280480
Alignment:
Q  584 caagtaactagcttagaatag-tttagttagttacagagttattatcctatgcttct 639  Q
    ||||||||||||||||| ||| ||||||||||||| |||| ||  ||||||||||||    
T  40280424 caagtaactagcttagattagttttagttagttactgagtaatgttcctatgcttct 40280480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 4e-46; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 525 - 639
Target Start/End: Complemental strand, 25189764 - 25189650
Alignment:
Q  525 tattgcatcacgaagaaaaacagaaagatgaaaatcttaaagtgtaatagcttgtctgacaagtaactagcttagaatagtttagttagttacagagtta 624  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  25189764 tattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagtttgtatgacaaataactaacttagaatagtttagttagttacagagtta 25189665  T
Q  625 ttatcctatgcttct 639  Q
    |||||||||||||||    
T  25189664 ttatcctatgcttct 25189650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 375 - 431
Target Start/End: Complemental strand, 19467474 - 19467418
Alignment:
Q  375 gaggtcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtg 431  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||    
T  19467474 gaggtcaaagttgtaatattttgagtgaaaactcgcaacccatttgcgggaatggtg 19467418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 203
Target Start/End: Original strand, 7554873 - 7555034
Alignment:
Q  43 ggataaagacctcaaagttggtctctcacggagagca-aaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgagaagctt 141  Q
    ||||||||||||||| |||||||||||| |||||||  |||  ||| || || ||||||||   || ||| | ||| |||||  |||||| |||||||||    
T  7554873 ggataaagacctcaatgttggtctctcatggagagctgaaaaaaatgccagctttggttatgccatcacactcaaacatgataacctcttggagaagctt 7554972  T
Q  142 acagttcttgaacaagtggaaaagtgattgatcgttgatgtagtaatgatcagcgaaattaa 203  Q
     |||||||| |||||||| | |||||||   ||||||||||||||||| |||| || |||||    
T  7554973 gcagttcttaaacaagtgaacaagtgatatgtcgttgatgtagtaatggtcagagagattaa 7555034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 434
Target Start/End: Original strand, 7555124 - 7555270
Alignment:
Q  288 aggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatgaagagattgaacgtgagaacatgagagtgaggtcaaagttg 387  Q
    |||| |||||||||||||||||||||||| ||||||||||| || |  ||| ||| ||  | ||| |  |  |  ||||| | ||||||||| |||||||    
T  7555124 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 7555223  T
Q  388 taatattttgagagaaaactcgtaagccatttgcgggaatggtgggt 434  Q
    |||||||||| |||||| |||| || ||| |||| || |||||||||    
T  7555224 taatattttgggagaaagctcgcaatccaattgcagggatggtgggt 7555270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 19467822 - 19467702
Alignment:
Q  44 gataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgagaagcttac 143  Q
    |||||||||||||| |||||||||||||||| |||| ||||||| || ||  | || ||||||| |||  |||| ||| |  ||||||  ||||||||||    
T  19467822 gataaagacctcaatgttggtctctcacggatagcagaagcaattccagcaatagtcatttgatcacaccaaaacatggtaacctcttcaagaagcttac 19467723  T
Q  144 agttcttgaacaagtggaaaa 164  Q
    | || || |||||||| ||||    
T  19467722 aattgttaaacaagtgaaaaa 19467702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 525 - 639
Target Start/End: Complemental strand, 8368505 - 8368389
Alignment:
Q  525 tattgcatcacgaagaaaaacagaaagatgaaaatcttaaagtgtaatagcttgtctgacaagtaactagcttagaatagtt--tagttagttacagagt 622  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||  ||||||||||||||||    
T  8368505 tattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagcttgtctggctagtaactagcttagaatagtttatagttagttacagagt 8368406  T
Q  623 tattatcctatgcttct 639  Q
    |||||||||||||||||    
T  8368405 tattatcctatgcttct 8368389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 375 - 465
Target Start/End: Complemental strand, 10169093 - 10169003
Alignment:
Q  375 gaggtcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggtagacaggagagatcgagtgatttgagtttct 465  Q
    |||||||||||| |||||||||||||||||||||| || ||||||||||||||||||  | |  |||| | |||||||||| |||||||||    
T  10169093 gaggtcaaagttctaatattttgagagaaaactcgcaacccatttgcgggaatggtgcattggtaggaaatatcgagtgatgtgagtttct 10169003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 375 - 465
Target Start/End: Complemental strand, 10176618 - 10176528
Alignment:
Q  375 gaggtcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggtagacaggagagatcgagtgatttgagtttct 465  Q
    |||||||||||| |||||||||||||||||||||| || ||||||||||||||||||  | |  |||| | |||||||||| |||||||||    
T  10176618 gaggtcaaagttctaatattttgagagaaaactcgcaacccatttgcgggaatggtgcattggtaggaaatatcgagtgatgtgagtttct 10176528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 407
Target Start/End: Original strand, 7977786 - 7977918
Alignment:
Q  275 tttggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatgaagagattgaacgtgagaacatgagagt 374  Q
    |||| ||| ||| |||||||||||||| ||||||||||||||||| || ||||| || |  |   ||  || || ||||| || || |||||||  ||||    
T  7977786 tttgaggttacttaggtcgagttcttcaagcaaagggaaacaatctgctatgagaaacatgtggttgatattaatagattcaatgttagaacatttgagt 7977885  T
Q  375 gaggtcaaagttgtaatattttgagagaaaact 407  Q
    ||||||||||||| ||||||||| |||||||||    
T  7977886 gaggtcaaagttgcaatattttgggagaaaact 7977918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 10615726 - 10615777
Alignment:
Q  375 gaggtcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaa 426  Q
    ||||||||||||||||| ||||| |||||| ||||||| |||||||||||||    
T  10615726 gaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaa 10615777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 490
Target Start/End: Complemental strand, 15091568 - 15091527
Alignment:
Q  449 gagtgatttgagtttctatgggaaaagagagatttgacagag 490  Q
    |||||||||||||||| |||||||||  ||||||||||||||    
T  15091568 gagtgatttgagtttcaatgggaaaattgagatttgacagag 15091527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 32785427 - 32785297
Alignment:
Q  60 ttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgagaagcttacagttcttgaacaagtg 159  Q
    ||||| |||||||||||||| |||| ||||| || |||| ||||| |||||||| ||||||||| || ||||||||||||||  |||| |||||||||||    
T  32785427 ttggtgtctcacggagagcagaagctataccggcattggatattttatgacagtcaaatatgatggcttctttgagaagcttcaagtttttgaacaagtg 32785328  T
Q  160 gaaaagtgattgatcgttgatgtagtaatga 190  Q
    |||||| ||||||| ||||||||| ||||||    
T  32785327 gaaaagcgattgattgttgatgtaataatga 32785297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 416
Target Start/End: Complemental strand, 1036651 - 1036613
Alignment:
Q  378 gtcaaagttgtaatattttgagagaaaactcgtaagcca 416  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  1036651 gtcaaagttgtaatattttgggagaaagctcgtaagcca 1036613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 43 - 434
Target Start/End: Complemental strand, 8186736 - 8186343
Alignment:
Q  43 ggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgagaagctta 142  Q
    ||||||||||||||| ||||||||||| |  || ||| ||||||| || || |||||||  |||  ||| | ||| |||||  |||||| |||| |||||    
T  8186736 ggataaagacctcaacgttggtctctcccatagggcagaagcaatgcctgctttggttaactgagaacacttaaacatgataacctcttcgagatgctta 8186637  T
Q  143 cagttcttgaacaagtggaaaagtgattgatcgttgatgtagtaatgatcagcgaaattaaactttcggagtttgaaaagtgtga-tgaaagaacctcta 241  Q
    || ||||| |||||||| |||||  |||  |||||||| |||| ||||| ||  | ||||| ||| || |||||||||||||  | ||||||| |||| |    
T  8186636 caattctttaacaagtgaaaaagcaatttgtcgttgatatagttatgattagatagattaaccttgcgaagtttgaaaagtgccaatgaaagagcctcaa 8186537  T
Q  242 ttccattga-gtagctttcatgattttttcactctttggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagt 340  Q
     |||||  | | || |     |||| ||  ||||||| |||| ||| || ||||||||||| || ||||| |||||||| || ||||||||||  |||||    
T  8186536 ctccatcaaagaagatactgagattgttgaactctttagggttactgagatcgagttcttctaggaaaggaaaacaatcggcgatgaggaagatgtcagt 8186437  T
Q  341 gccatgaagagattgaacgtgagaacatgagagtgaggtcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggt 434  Q
    || ||  | ||||| || ||  ||||||| ||||||||||||||||||||||||| | |||| |||||| || |||||||| ||||||||||||    
T  8186436 gctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggt 8186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 7308233 - 7308355
Alignment:
Q  43 ggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgagaagctta 142  Q
    ||||||||| | ||| |||||||||||| | ||||||  |||||| || |||||||||| |||||||||||  |||||||| |||||||  |||||||||    
T  7308233 ggataaagagcgcaatgttggtctctcatgtagagcagtagcaatgcctgcgttggttagttgatgacagtctaatatgatggcctcttccagaagctta 7308332  T
Q  143 cagttcttgaacaagtggaaaag 165  Q
    || ||||| ||||||||||||||    
T  7308333 caattcttaaacaagtggaaaag 7308355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 400
Target Start/End: Complemental strand, 7225294 - 7225179
Alignment:
Q  284 actaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatgaagagattgaacgtgagaacatgagagtgaggtcaaa 383  Q
    |||||||||||||||||||||||||||||||||||| || |||||||| |  ||||||| |   | ||| | || ||| ||||||| ||| |||||||||    
T  7225294 actaaggtcgagttcttcgagcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgacagaataaatgtg-gaacatgtgagagaggtcaaa 7225196  T
Q  384 gttgtaatattttgaga 400  Q
    |||||||||||||||||    
T  7225195 gttgtaatattttgaga 7225179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 532589 - 532680
Alignment:
Q  133 gagaagcttacagttcttgaacaagtggaaaagtgattgatcgttgatgtagtaatgatcagcgaaattaaactttcggagtttgaaaagtg 224  Q
    |||||||||||| || ||||||||||||||||| ||||| ||||||||||||| ||||  ||  | ||||| ||| ||||||||||||||||    
T  532589 gagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtg 532680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 173
Target Start/End: Complemental strand, 21833689 - 21833554
Alignment:
Q  38 gaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgagaa 137  Q
    |||| ||||||||| ||||| ||||||||||||||||||||  ||||||| ||  |  || ||||||||| ||| | ||| |||||  ||||||  ||||    
T  21833689 gaaaaggataaagaactcaatgttggtctctcacggagagctgaagcaatgccttctctgcttatttgatcacaatcaaacatgatgacctcttcaagaa 21833590  T
Q  138 gcttacagttcttgaacaagtggaaaagtgattgat 173  Q
    ||||||| ||||| | |||||||||||| |||||||    
T  21833589 gcttacaattctttagcaagtggaaaagagattgat 21833554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 375 - 469
Target Start/End: Original strand, 553772 - 553866
Alignment:
Q  375 gaggtcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggtagacaggagagatcgagtgatttgagtttctatgg 469  Q
    ||||||||||||||||| ||||| |||||| |||| || |||||||||||||||||||||     |||||||||||||||| |||| ||| ||||    
T  553772 gaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgaggttcaatgg 553866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 1547843 - 1547794
Alignment:
Q  278 ggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatga 327  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  1547843 ggggtaactaaggtcgagttcttcgagaaaagggaaacaatcggcaatga 1547794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 2368049 - 2367988
Alignment:
Q  277 tggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 338  Q
    |||| ||||| | ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  2368049 tgggataactgatgtcgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatca 2367988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 2373615 - 2373554
Alignment:
Q  277 tggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 338  Q
    |||| ||||| | ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  2373615 tgggataactcaagtcaagttcttcgagcaaagggaaacaatcagcaatgaagaagagatca 2373554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 567 - 639
Target Start/End: Complemental strand, 23872109 - 23872037
Alignment:
Q  567 tgtaatagcttgtctgacaagtaactagcttagaatagtttagttagttacagagttattatcctatgcttct 639  Q
    |||||||||||| |  |||||||||||||||||| |||||||||||||||| ||||| | ||||||| |||||    
T  23872109 tgtaatagcttgccgtacaagtaactagcttagattagtttagttagttactgagttgtaatcctatacttct 23872037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 5106684 - 5106639
Alignment:
Q  293 gagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 338  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||    
T  5106684 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatca 5106639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 12124507 - 12124568
Alignment:
Q  277 tggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 338  Q
    |||| ||||| ||||| |||||||| || |||||||||||||||||||||| ||||||||||    
T  12124507 tgggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagagatca 12124568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 1601177 - 1601225
Alignment:
Q  38 gaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaa 86  Q
    |||| ||||||||||||||| ||||||||||||||||||||| ||||||    
T  1601177 gaaaaggataaagacctcaatgttggtctctcacggagagcagaagcaa 1601225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 246
Target Start/End: Complemental strand, 7225528 - 7225324
Alignment:
Q  43 ggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgagaagctta 142  Q
    ||||||||||||||| ||||||||||||   | |||| |||  || || || | ||||| |||| ||||   ||| | ||| || |||| |||||||||     
T  7225528 ggataaagacctcaatgttggtctctcaattaaagcagaagacatgcctgcttgggttaattgaggacatctaaacacgatggcatcttcgagaagcttg 7225429  T
Q  143 cagttcttgaacaagtggaaaagtgattgatcgttgatgtagtaatgatcagcgaaattaaactttcggagtttgaaaagtg-tgatgaaagaacctcta 241  Q
    || ||||| ||||| ||||||||  ||| ||| |||||||| | |||| ||| || ||||| | | |||||||||||||||| |||||||||| ||||||    
T  7225428 caattcttaaacaaatggaaaagcaattcatcattgatgtattcatgaccagagagattaaccctacggagtttgaaaagtgctgatgaaagagcctcta 7225329  T
Q  242 ttcca 246  Q
     ||||    
T  7225328 ctcca 7225324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 288 - 404
Target Start/End: Original strand, 1755479 - 1755595
Alignment:
Q  288 aggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatgaaga-gattgaacgtgagaacatgagagtgaggtcaaagtt 386  Q
    |||| ||||||||| |||||||||||||| ||||||||||||||||  ||| ||  ||| ||| ||  ||   || ||||||| ||| ||||||||||||    
T  1755479 aggttgagttcttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttg-gaacatgtgagagaggtcaaagtt 1755577  T
Q  387 gtaatattttgagagaaa 404  Q
    ||||| ||||||||||||    
T  1755578 gtaatcttttgagagaaa 1755595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 2518911 - 2518956
Alignment:
Q  293 gagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 338  Q
    |||||||| ||| |||||||||||||||||||||| ||||||||||    
T  2518911 gagttctttgagtaaagggaaacaatcagcaatgaagaagagatca 2518956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 2621541 - 2621488
Alignment:
Q  285 ctaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 338  Q
    ||||||| |||||||||||| ||||||||||||||||||| || ||| ||||||    
T  2621541 ctaaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatca 2621488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 641690 - 641826
Alignment:
Q  47 aaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgagaagcttacagt 146  Q
    ||||| ||||| ||||||||||| || | |||| ||||||| ||   | |||||||  ||||||| | ||  ||||| |||||| ||||||| |||||||    
T  641690 aaagatctcaatgttggtctctcgcgtatagcagaagcaatgcctttgatggttatgcgatgacaattaagaatgatagcctctctgagaagtttacagt 641789  T
Q  147 tcttgaacaagtggaaaagtgattgatcgttgatgta 183  Q
    ||||||||||   ||||||| ||||||| || |||||    
T  641790 tcttgaacaacacgaaaagtaattgatcattcatgta 641826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 2363210 - 2363162
Alignment:
Q  288 aggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagat 336  Q
    |||| |||||| ||||| |||||||||||||||||||||| ||||||||    
T  2363210 aggttgagttcgtcgaggaaagggaaacaatcagcaatgaagaagagat 2363162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 432
Target Start/End: Original strand, 661871 - 661928
Alignment:
Q  375 gaggtcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgg 432  Q
    ||||| ||||||||||||| ||| |||||| |||| || ||||| |||||||||||||    
T  661871 gaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtgg 661928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 2477261 - 2477306
Alignment:
Q  293 gagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 338  Q
    ||||||||| |||||||||||||||| || ||||| ||||||||||    
T  2477261 gagttcttctagcaaagggaaacaattagaaatgaagaagagatca 2477306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 2533991 - 2534036
Alignment:
Q  293 gagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 338  Q
    ||||||||| || |||||||||||||||||||| | ||||||||||    
T  2533991 gagttcttcaagtaaagggaaacaatcagcaatcaagaagagatca 2534036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 55907714 - 55907677
Alignment:
Q  379 tcaaagttgtaatattttgagagaaaactcgtaagcca 416  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  55907714 tcaaagttgtaatattttgggagaaagctcgtaagcca 55907677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 2467224 - 2467264
Alignment:
Q  297 tcttcgagcaaagggaaacaatcagcaatgaggaagagatc 337  Q
    |||||||| |||||||||||||||||||||| ||| |||||    
T  2467224 tcttcgagtaaagggaaacaatcagcaatgaagaaaagatc 2467264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 5035301 - 5035345
Alignment:
Q  294 agttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 338  Q
    ||||||||||| |||||||||||||||||||| | ||| ||||||    
T  5035301 agttcttcgagtaaagggaaacaatcagcaatcaagaaaagatca 5035345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 525 - 594
Target Start/End: Complemental strand, 163 - 94
Alignment:
Q  525 tattgcatcacgaagaaaaacagaaagatgaaaatcttaaagtgtaatagcttgtctgacaagtaactag 594  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||||    
T  163 tattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagtttgtatgacaaataactag 94  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 47 - 225
Target Start/End: Original strand, 9411810 - 9411988
Alignment:
Q  47 aaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgagaagcttacagt 146  Q
    ||||||||||| ||||||||||||| ||||||| || |||| ||  | ||||||||   | |||||  ||| |||||  |||||| ||||||||||||||    
T  9411810 aaagacctcaaggttggtctctcacagagagcagaaacaatgccaactttggttatgctacgacagcgaaacatgataacctcttggagaagcttacagt 9411909  T
Q  147 tcttgaacaagtggaaaagtgattgatcgttgatgtagtaatgatcagcgaaattaaactttcggagtttgaaaagtgt 225  Q
    |||| ||||||| ||| ||||||   ||||||||||||| |||| ||| || ||||| |||   |||||||||||||||    
T  9411910 tcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaagtgt 9411988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 6588657 - 6588521
Alignment:
Q  45 ataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgagaagcttaca 144  Q
    |||||||| ||||  |||||||||||||||||||| ||||||| || || ||||||| || | ||||   ||||||| |  | || | ||||||||||||    
T  6588657 ataaagacgtcaattttggtctctcacggagagcagaagcaatgcctgcattggttaattcacgacaaccaaatatgttgacttcctggagaagcttaca 6588558  T
Q  145 gttcttgaacaagtggaaaagtgattgatcgttgatg 181  Q
     || ||||||||||||||||| ||||||| |||||||    
T  6588557 attgttgaacaagtggaaaagcgattgattgttgatg 6588521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 6593974 - 6593923
Alignment:
Q  375 gaggtcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaa 426  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||||| |||||    
T  6593974 gaggtcaaagttgtaatcttttgtgagaaaactcgcaaaccatttgagggaa 6593923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 385
Target Start/End: Original strand, 6432758 - 6432856
Alignment:
Q  287 aaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatgaagagattgaacgtgagaacatgagagtgaggtcaaagt 385  Q
    ||||| ||||| || |||||||||||||||||| |||||||| ||||| | || || || |||||| |||| ||| |||||   ||| |||||||||||    
T  6432758 aaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaagaggtgagagctattaagagaatgaatgtgggaacaattgagagaggtcaaagt 6432856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 9412050 - 9412090
Alignment:
Q  288 aggtcgagttcttcgagcaaagggaaacaatcagcaatgag 328  Q
    |||| ||||||||| |||||||||||||| |||||||||||    
T  9412050 aggttgagttcttcaagcaaagggaaacattcagcaatgag 9412090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 379 - 483
Target Start/End: Complemental strand, 1925 - 1821
Alignment:
Q  379 tcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggtagacaggagagatcgagtgatttgagtttctatgggaaaagaga 478  Q
    ||||||||||||||||||| || |||||||| || |||| |||||||||  ||||| |  ||||||||| ||||||| |||| ||| |||||||| ||||    
T  1925 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 1826  T
Q  479 gattt 483  Q
    |||||    
T  1825 gattt 1821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 379 - 483
Target Start/End: Original strand, 8291 - 8395
Alignment:
Q  379 tcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggtagacaggagagatcgagtgatttgagtttctatgggaaaagaga 478  Q
    ||||||||||||||||||| || |||||||| || |||| |||||||||  ||||| |  ||||||||| ||||||| |||| ||| |||||||| ||||    
T  8291 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 8390  T
Q  479 gattt 483  Q
    |||||    
T  8391 gattt 8395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 379 - 483
Target Start/End: Complemental strand, 30688 - 30584
Alignment:
Q  379 tcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggtagacaggagagatcgagtgatttgagtttctatgggaaaagaga 478  Q
    ||||||||||||||||||| || |||||||| || |||| |||||||||  ||||| |  ||||||||| ||||||| |||| ||| |||||||| ||||    
T  30688 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 30589  T
Q  479 gattt 483  Q
    |||||    
T  30588 gattt 30584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 37 - 171
Target Start/End: Complemental strand, 514061 - 513927
Alignment:
Q  37 ggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgaga 136  Q
    ||||| ||||| |||  |||| ||||||||||||||||||||| ||||||||||    ||||||||  |||  || | ||| |||||  ||||||  |||    
T  514061 ggaaaaggatatagaggtcaatgttggtctctcacggagagcagaagcaataccttgtttggttatgcgatcgcaattaaagatgataacctcttgaaga 513962  T
Q  137 agcttacagttcttgaacaagtggaaaagtgattg 171  Q
    ||||||||||| ||||||||||||||||| |||||    
T  513961 agcttacagtttttgaacaagtggaaaagcgattg 513927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 51763783 - 51763672
Alignment:
Q  36 tggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgcctctttgag 135  Q
    |||||| |||||||||| |||| |||||||| |||||||||||| |||  |  || || ||||||||||||| ||||| ||| |||||  | |||| |||    
T  51763783 tggaaaaggataaagacgtcaatgttggtctttcacggagagcagaagtgactcctgcattggttatttgatcacagtcaaacatgatgacatcttggag 51763684  T
Q  136 aagcttacagtt 147  Q
    ||||||||||||    
T  51763683 aagcttacagtt 51763672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 51763540 - 51763489
Alignment:
Q  277 tggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgag 328  Q
    |||||||||| |||||||||||||||||||| |||||||| || ||||||||    
T  51763540 tggggtaactgaggtcgagttcttcgagcaatgggaaacattccgcaatgag 51763489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 371 - 484
Target Start/End: Complemental strand, 51120703 - 51120590
Alignment:
Q  371 gagtgaggtcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggtagacaggagagatcgagtgatttgagtttctatggg 470  Q
    |||||| ||||||||||||| ||||||||||||| |||| || ||||| ||  || ||||||||     |||||||| |||||||   |||||| |||||    
T  51120703 gagtgaagtcaaagttgtaacattttgagagaaagctcgcaatccattggcaagattggtgggtgtgttggagagatggagtgatcgaagtttcaatggg 51120604  T
Q  471 aaaagagagatttg 484  Q
    |||||||| |||||    
T  51120603 aaaagagatatttg 51120590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University