View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_71 (Length: 301)
Name: NF19615_low_71
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 25946847 - 25946568
Alignment:
| Q |
12 |
aagaagacacaccaattgtcgacgcttgaaaacactcatttataaaacgactgatcaagtgataatctaaatatcccaacggataatttgnnnnnnnnt- |
110 |
Q |
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| T |
25946847 |
aagaagacacaccaattgtcgacgcttgaaaacactcatttataaaacgactgatcaagtgataatctaaatatcctaaccgataatttgaaagaaaaaa |
25946748 |
T |
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| Q |
111 |
---tcttaaaatatttgaactgaaataattattatattcatgttagattttgataaggtatgtattataatgtttgtttattaatgttttatgcataacc |
207 |
Q |
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| T |
25946747 |
aaatcttaaaatatttgaactgaaataattattatattcatgttagattttgataaggtatgtattataatgtttgtttattaatgttttatgcataacc |
25946648 |
T |
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| Q |
208 |
ttttaaattgttttgcatattcctatatgccatttggtttttcagaaacttagcaacacgataaggtgcattggacgtga |
287 |
Q |
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| T |
25946647 |
ttttaaattgttttgcatattcctatatgtcatttggtttttcagaaacttagcaacacgataaggtgcattggacgtga |
25946568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 30801143 - 30801090
Alignment:
| Q |
110 |
ttcttaaaatatttgaactgaaataattattatattcatgttagattttgataa |
163 |
Q |
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||||||||||| || ||||||||||||||| ||||||| || ||||||||||| |
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| T |
30801143 |
ttcttaaaatacttttactgaaataattattttattcatatttgattttgataa |
30801090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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