View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_72 (Length: 301)
Name: NF19615_low_72
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_72 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 31071863 - 31072136
Alignment:
| Q |
18 |
ttaatgtacaccaatgtcttgtctggaatttcgtacccttcgatgtcgcactttttcatcgtttctcttggtaaaagtacgggtaatgacgggtacagtc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31071863 |
ttaatgtacaccaatgtcttgtctggaatttcgtacccttcgatgtcgcactttttcatcgtttctcttggtaaaagtacgggtaatgacgggtacagtc |
31071962 |
T |
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| Q |
118 |
tcattgattcttttataactgccttgaaatacggaagcttttcgacatcttcttcctctataaaacccttcccttcatatgcttttcgaatctcttcttg |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
31071963 |
tcattgattcttttataactgccttgaaatatggaagcttttggacatcttcttcctctataaaacctttcccttcatatgctttccgaatctcttcttg |
31072062 |
T |
|
| Q |
218 |
tactttctgcatcactcttggattcttcattaatgcagtcatagcccaaactaccgcggccgcaattgtctctg |
291 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
31072063 |
tactttctgcatcactcttggattcttcattagtgcagtcatagcccaaactaccgcggccgcaattgtgtctg |
31072136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 23 - 291
Target Start/End: Original strand, 31053036 - 31053304
Alignment:
| Q |
23 |
gtacaccaatgtcttgtctggaatttcgtacccttcgatgtcgcactttttcatcgtttctcttggtaaaagtacgggtaatgacgggtacagtctcatt |
122 |
Q |
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|||||||||||||||||||||||| ||||||||| | |||| ||| ||| |||| ||||||||||||||||||| || || ||||||| ||||||| |
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| T |
31053036 |
gtacaccaatgtcttgtctggaatgtcgtaccctgcaatgttgcaatttgtcattgtttctcttggtaaaagtataggcaaaattgggtacaatctcatt |
31053135 |
T |
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| Q |
123 |
gattcttttataactgccttgaaatacggaagcttttcgacatcttcttcctctataaaacccttcccttcatatgcttttcgaatctcttcttgtactt |
222 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || | |||| ||||||||||||||||||| |
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| T |
31053136 |
gattcttttataacggccttgaaatatggaagcttttcgacatcttcttcctctataaaacctttccctgcacacactttccgaatctcttcttgtactt |
31053235 |
T |
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| Q |
223 |
tctgcatcactcttggattcttcattaatgcagtcatagcccaaactaccgcggccgcaattgtctctg |
291 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||| |
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| T |
31053236 |
tctgcatcgctcttggattcttcattagtgcagtcatagcccagactaccgctgccgcaattgtttctg |
31053304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 23 - 291
Target Start/End: Original strand, 31039546 - 31039814
Alignment:
| Q |
23 |
gtacaccaatgtcttgtctggaatttcgtacccttcgatgtcgcactttttcatcgtttctcttggtaaaagtacgggtaatgacgggtacagtctcatt |
122 |
Q |
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|||||||||||||||||||||||| ||||||||| | |||| ||| ||| |||| ||||||||||||||||||| || || ||||||| |||||| |
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| T |
31039546 |
gtacaccaatgtcttgtctggaatgtcgtaccctgcaatgttgcaatttgtcattgtttctcttggtaaaagtataggcaaaattgggtacaatctcatc |
31039645 |
T |
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| Q |
123 |
gattcttttataactgccttgaaatacggaagcttttcgacatcttcttcctctataaaacccttcccttcatatgcttttcgaatctcttcttgtactt |
222 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || | |||| ||||||||||||||||||| |
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| T |
31039646 |
gattcttttataacggccttgaaatatggaagcttttcgacatcttcttcctctataaaacctttccctgcacacactttccgaatctcttcttgtactt |
31039745 |
T |
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| Q |
223 |
tctgcatcactcttggattcttcattaatgcagtcatagcccaaactaccgcggccgcaattgtctctg |
291 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||| |
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| T |
31039746 |
tctgcatcgctcttggattcttcattagcgcagtcatagcccagactaccgctgccgcaattgtttctg |
31039814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 20074300 - 20074364
Alignment:
| Q |
201 |
tttcgaatctcttcttgtactttctgcatcactcttggattcttcattaatgcagtcatagccca |
265 |
Q |
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|||| |||||||| ||||||||||| ||| ||||||||||| || |||||||||||||||||||| |
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| T |
20074300 |
tttctaatctcttgttgtactttcttcattactcttggattttttattaatgcagtcatagccca |
20074364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 8914751 - 8914814
Alignment:
| Q |
206 |
aatctcttcttgtactttctgcatcactcttggattcttcattaatgcagtcatagcccaaact |
269 |
Q |
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| T |
8914751 |
aatctcttgttgtactttcttcattactcttggattttttattaaggcagtcatagcccaaact |
8914814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 8900846 - 8900910
Alignment:
| Q |
206 |
aatctcttcttgtactttctgcatcactcttggattcttcattaatgcagtcatagcccaaacta |
270 |
Q |
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| T |
8900846 |
aatctcttgttgcactttcttcattactcttggattttttattaaggcagtcatagcccaaacta |
8900910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 8929673 - 8929737
Alignment:
| Q |
206 |
aatctcttcttgtactttctgcatcactcttggattcttcattaatgcagtcatagcccaaacta |
270 |
Q |
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|||||||||||||||||||| ||| |||||||| || || |||| |||||||||||||| |||| |
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| T |
8929673 |
aatctcttcttgtactttcttcattactcttgggttttttattagggcagtcatagcccacacta |
8929737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 9000441 - 9000497
Alignment:
| Q |
213 |
tcttgtactttctgcatcactcttggattcttcattaatgcagtcatagcccaaact |
269 |
Q |
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|||||||||||| ||| |||||||| || |||||||| |||||||||||||||||| |
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| T |
9000441 |
tcttgtactttcctcattactcttgggtttttcattaaggcagtcatagcccaaact |
9000497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 15644 - 15577
Alignment:
| Q |
201 |
tttcgaatctcttcttgtactttctgcatcactcttggattcttcattaatgcagtcatagcccaaac |
268 |
Q |
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|||| ||| |||||||| |||||| ||| |||||||||||||||||||| ||||||| |||||||| |
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| T |
15644 |
tttctaatttcttcttgagctttcttcattgctcttggattcttcattaatccagtcatcgcccaaac |
15577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 3630441 - 3630508
Alignment:
| Q |
201 |
tttcgaatctcttcttgtactttctgcatcactcttggattcttcattaatgcagtcatagcccaaac |
268 |
Q |
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|||| ||| |||||||| |||||| ||| |||||||||||||||||||| ||||||| |||||||| |
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| T |
3630441 |
tttctaatttcttcttgagctttcttcattgctcttggattcttcattaatccagtcatcgcccaaac |
3630508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 7622932 - 7622973
Alignment:
| Q |
227 |
catcactcttggattcttcattaatgcagtcatagcccaaac |
268 |
Q |
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||||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
7622932 |
catcactcttggattgttcatcaatgctgtcatagcccaaac |
7622973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 7627483 - 7627524
Alignment:
| Q |
227 |
catcactcttggattcttcattaatgcagtcatagcccaaac |
268 |
Q |
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||||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
7627483 |
catcactcttggattgttcatcaatgctgtcatagcccaaac |
7627524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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