View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_73 (Length: 298)
Name: NF19615_low_73
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_73 |
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| [»] scaffold0070 (2 HSPs) |
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| [»] scaffold0526 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 25489554 - 25489282
Alignment:
| Q |
18 |
tattaatggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25489554 |
tattaatggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactttctaatca |
25489455 |
T |
|
| Q |
118 |
gtttttgattgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtt |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25489454 |
gtttttgattgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtt |
25489355 |
T |
|
| Q |
218 |
tgcccgaaatcaacaagcaaaaaagatgtttnnnnnnnnncaattgcttccagtaattaaactctttgatgat |
290 |
Q |
| |
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||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
25489354 |
tgcacgaaatcaacaagcaaaaaagatgtttaaaaaaaaacaattgcttccagtaattaaactatttgatgat |
25489282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 25646376 - 25646202
Alignment:
| Q |
18 |
tattaatggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatca |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
25646376 |
tattaatggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaaccttctaatca |
25646277 |
T |
|
| Q |
118 |
gtttttgattgaatatttctgtcttttatgtcatatcaggtggtg-----tctacttactaggttgctacataat |
187 |
Q |
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|||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| |
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| T |
25646276 |
gtttttagttgaatatttctgtcttttatgttatagcaggtggtgtctagtctacttactaggttgctacataat |
25646202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 24913740 - 24913915
Alignment:
| Q |
18 |
tattaatggtgcagtctttggaggagaatagtagtaagggtcttga----ctcattgtgtaagaataggaagaaaagatcttctattactgaactgtcta |
113 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| || ||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
24913740 |
tattaatggtgcagtctttggaggaaa---gtagtgagcgtcttgattgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttcta |
24913836 |
T |
|
| Q |
114 |
atcagtttttgattgaatatttctgtcttttatgtcatatcaggtggt-----gtctacttactaggttgctacataat |
187 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| |
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| T |
24913837 |
atcagtttttggttgaatatttctgtcttttatgttatagcaggtggtgtctagtctacttactaggttgctacataat |
24913915 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 25603958 - 25603826
Alignment:
| Q |
18 |
tattaatggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatca |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||| |
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|
| T |
25603958 |
tattaatggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttatattactgaactttctaatca |
25603862 |
T |
|
| Q |
118 |
gt-ttttgattgaatatttctgtcttttatgtcata |
152 |
Q |
| |
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|| ||||| ||||||||||||| ||||| ||||||| |
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| T |
25603861 |
gttttttggttgaatatttctgccttttttgtcata |
25603826 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 25799647 - 25799544
Alignment:
| Q |
18 |
tattaatggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatca |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||||| |
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| T |
25799647 |
tattaatggtgcagtctttggaggaga---gtagtgagggtcttgaatcattgtgtaagaatgggaagaaaagatcttctattactgaactttgtaatca |
25799551 |
T |
|
| Q |
118 |
gtttttg |
124 |
Q |
| |
|
||||||| |
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|
| T |
25799550 |
gtttttg |
25799544 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 25694706 - 25694637
Alignment:
| Q |
18 |
tattaatggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaa |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25694706 |
tattaatggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaa |
25694637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 25322011 - 25321934
Alignment:
| Q |
18 |
tattaatggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttcta |
98 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25322011 |
tattaatggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtaagaatgggaagaaaagatcttcta |
25321934 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 25569208 - 25569119
Alignment:
| Q |
85 |
gaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtggtgtctacttactag |
174 |
Q |
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|||||||||||||||||||||||| ||||||| ||||| ||| |||||| | |||| | ||||||| ||||||||||||| ||||||| |
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|
| T |
25569208 |
gaaaagatcttctattactgaacttgctaatcatttttttgttgcatatttatttcttctctgtcataccaggtggtgtctagttactag |
25569119 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 25321937 - 25321889
Alignment:
| Q |
110 |
tctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggt |
158 |
Q |
| |
|
||||||||||||||| |||||||| |||| ||||||||||||| ||||| |
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|
| T |
25321937 |
tctaatcagtttttggttgaatatatctgccttttatgtcatagcaggt |
25321889 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 25385442 - 25385414
Alignment:
| Q |
186 |
atcttgtgtcaaaagtacaaaaatatatt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
25385442 |
atcttgtgtcaaaagtacaaaaatatatt |
25385414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 17783 - 17951
Alignment:
| Q |
18 |
tattaatggtgcagtctttggaggagaatagtagtaagggtc----ttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtcta |
113 |
Q |
| |
|
|||||||||||||||| ||||||| | |||||| |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |
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|
| T |
17783 |
tattaatggtgcagtccttggagg---aaagtagtgagggtcttgattgactcattgtgtaagaatgggaagaaaaga--ttctattactgaactttcta |
17877 |
T |
|
| Q |
114 |
atcagtttttgattgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataat |
187 |
Q |
| |
|
||||||||||| || | ||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17878 |
atcagtttttggttaattatttttgtcttttatgttatagcaggtggtgtctacttactaggttgctacataat |
17951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 18361 - 18389
Alignment:
| Q |
186 |
atcttgtgtcaaaagtacaaaaatatatt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18361 |
atcttgtgtcaaaagtacaaaaatatatt |
18389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0526 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0526
Description:
Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 11146 - 11191
Alignment:
| Q |
139 |
tcttttatgtcatatcaggtggtgtctacttactaggttgctacat |
184 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||||| ||||||||| |
|
|
| T |
11146 |
tcttttgtgtcataccatgtggtgtctacttactagtttgctacat |
11191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 11971234 - 11971279
Alignment:
| Q |
139 |
tcttttatgtcatatcaggtggtgtctacttactaggttgctacat |
184 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||||| ||||||||| |
|
|
| T |
11971234 |
tcttttgtgtcataccatgtggtgtctacttactagtttgctacat |
11971279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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