View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_75 (Length: 293)
Name: NF19615_low_75
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_75 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 36135860 - 36136152
Alignment:
| Q |
1 |
aagacttactgctcacagaaagctttcttattgcttgtaagttctattatggttggtgcaaccaggaaaatcacgagaagcattttgttttcaaacacat |
100 |
Q |
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| T |
36135860 |
aagacttactgctcacagaaagctttcttattgcttgtaagttctgttatggttggtgcaaccaggaaaatcacgagaagcattttgtttccaaacacat |
36135959 |
T |
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| Q |
101 |
caatattattgattctctgcgggcaagcaacaacctggggcgtagcagcgtagcaacagtaaaggtatttaactttaaaacctacatcggaacaattctt |
200 |
Q |
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| T |
36135960 |
caatattattgattctctgcgggcaagcaacaacctggggcgtagccgcgtagcatcagtaaaggtatataactttaaaaccttcatcggaacaattctt |
36136059 |
T |
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| Q |
201 |
tttatttaagatgtttctgttacatacgtgtaagnnnnnnncgttaatttgttcgctgaatatagaagttgtatgaagtgtctgcagtatatt |
293 |
Q |
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| T |
36136060 |
tttatttaagatgtttctgttacatacgtgtaagaaaaaaacgttaatttgttcgctgaatatagaagttgtatgaagtgtctgcagtatatt |
36136152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 41337414 - 41337698
Alignment:
| Q |
1 |
aagacttactgctcacagaaagctttcttattgcttgtaagttctattatggttggtgcaaccaggaaaatcacgagaagcattttgttttcaaacacat |
100 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
41337414 |
aagacttgctgctcacagaaagctttcttattgcttcaaagttctgttatggttggcgcaaccagaaaaatcgagagaagcattttgtttccaaacacat |
41337513 |
T |
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| Q |
101 |
caatattattgattctctgcgggcaagcaacaacctggggcgtagcagcgtagcaacagtaaaggtatttaactttaaaacctacatcggaacaattctt |
200 |
Q |
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| T |
41337514 |
caatattattgatcctctgcaggaaaacaacaacctggg--------gcatagcatcagtagaggtatttcactttaaaaccttcattgaaacaattc-t |
41337604 |
T |
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| Q |
201 |
tttatttaagatgtttctgttacatacgtgtaag-nnnnnnncgttaatttgttcgctgaatatagaagttgtatgaagtgtctgcagtatatt |
293 |
Q |
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| T |
41337605 |
tttatcaaagatgattctgttacatacgtgtaagaaaaagaacgttgatttgttcgctgaatatagaaggtgtatgaagtgtctacagtatatt |
41337698 |
T |
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