View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19615_low_76 (Length: 290)

Name: NF19615_low_76
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19615_low_76
NF19615_low_76
[»] chr7 (13 HSPs)
chr7 (19-279)||(38187290-38187548)
chr7 (71-272)||(38149410-38149609)
chr7 (76-273)||(38157184-38157381)
chr7 (160-207)||(38172726-38172773)
chr7 (160-209)||(35072871-35072920)
chr7 (160-209)||(35099208-35099257)
chr7 (158-204)||(38285771-38285817)
chr7 (160-204)||(33860875-33860919)
chr7 (160-204)||(34146805-34146849)
chr7 (160-204)||(34180489-34180533)
chr7 (160-204)||(35082952-35082996)
chr7 (164-200)||(42797264-42797300)
chr7 (160-208)||(43028104-43028152)
[»] chr2 (2 HSPs)
chr2 (86-209)||(12409232-12409355)
chr2 (86-209)||(12421292-12421415)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 38187548 - 38187290
Alignment:
Q  19 tagctacataggtggtaaaatttctagctacataggtggtggtcagtatattaatgtttttgagttttctggactgaaaaatttgacaacaattgtgttt 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38187548 tagctacagaggtggtaaaatttctagctacataggtggtggtcagtatattaatgtttttgagttttctggactgaaaaatttgacaacgattgtgttt 38187449  T
Q  119 gatggaatccgtgattgtctccaacgtttttccatgccccttttgttttctgaatgtctccaactcgaggatgtcacctttaagaattgcaagcagatag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || |||||||| || |    
T  38187448 gatggaatccgtgattgtctccaacgtttttccatgccccttttgttttctgaatgtctccaactcgaggacgtcacctttcaaaactgcaagcaaatgg 38187349  T
Q  219 atattatgaatattatcagtccgaagttgcttcatttgaaaataattgattgtgagtataa 279  Q
    ||| |||||||||  ||||||| ||||||| |||||| |||||||| ||||||||||||||    
T  38187348 ataatatgaatat--tcagtccaaagttgcatcatttcaaaataatagattgtgagtataa 38187290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 71 - 272
Target Start/End: Complemental strand, 38149609 - 38149410
Alignment:
Q  71 aatgtttttgagttttctggactgaaaaatttgacaacaattgtgtttgatggaatccgtgattgtctccaacgtttttccatgccccttttgttttctg 170  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||     |||||||||  |  |  ||| || |||||||||||||    
T  38149609 aatgcttttgagttttctggactgaaaaatgtgacaaccattgtgtttgatggaatccaaagatgtctccaagatgatgtcatacctcttttgttttctg 38149510  T
Q  171 aatgtctccaactcgaggatgtcacctttaagaattgcaagcagatagatattatgaatattatcagtccgaagttgcttcatttgaaaataattgattg 270  Q
    ||||||||||||||||  |  |||||||||||||||||| |  | ||  |  | ||||||||| |||||| ||||||| |||||||||| ||||||||||    
T  38149509 aatgtctccaactcga--acctcacctttaagaattgcaggatggtacgtgatttgaatattaccagtccaaagttgcgtcatttgaaattaattgattg 38149412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 273
Target Start/End: Complemental strand, 38157381 - 38157184
Alignment:
Q  76 ttttgagttttctggactgaaaaatttgacaacaattgtgtttgatggaatccgtgattgtctccaacgtttttccatgccccttttgttttctgaatgt 175  Q
    ||||| |||||||||||| |||||| ||||||| ||||| ||||||||||||| | |   ||||||||    |  ||| |  ||||||||||||||||||    
T  38157381 ttttgggttttctggactaaaaaatgtgacaacgattgtatttgatggaatccatcaaaatctccaacaagatgtcattcgtcttttgttttctgaatgt 38157282  T
Q  176 ctccaactcgaggatgtcacctttaagaattgcaagcagatagatattatgaatattatcagtccgaagttgcttcatttgaaaataattgattgtga 273  Q
    ||||||||||||||||||||||||||||| ||   |   ||| ||| | |||||||||  ||| | |||||||  |||||||||||||||||||||||    
T  38157281 ctccaactcgaggatgtcacctttaagaactgttggatcatatataatttgaatattactagtacaaagttgcaccatttgaaaataattgattgtga 38157184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 38172773 - 38172726
Alignment:
Q  160 tttgttttctgaatgtctccaactcgaggatgtcacctttaagaattg 207  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||    
T  38172773 tttgttttctgaatgtctccaacttgaggacgtcacctttaagaattg 38172726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 35072920 - 35072871
Alignment:
Q  160 tttgttttctgaatgtctccaactcgaggatgtcacctttaagaattgca 209  Q
    ||||||||| |||||||||||||| || ||||||||||||||||| ||||    
T  35072920 tttgttttccgaatgtctccaacttgaagatgtcacctttaagaactgca 35072871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 35099257 - 35099208
Alignment:
Q  160 tttgttttctgaatgtctccaactcgaggatgtcacctttaagaattgca 209  Q
    ||||||||| |||||||||||||| || ||||||||||||||||| ||||    
T  35099257 tttgttttccgaatgtctccaacttgaagatgtcacctttaagaactgca 35099208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 38285817 - 38285771
Alignment:
Q  158 cttttgttttctgaatgtctccaactcgaggatgtcacctttaagaa 204  Q
    |||||||||||||  ||||||||||||||||| |||||||| |||||    
T  38285817 cttttgttttctgtgtgtctccaactcgaggacgtcaccttgaagaa 38285771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 33860875 - 33860919
Alignment:
Q  160 tttgttttctgaatgtctccaactcgaggatgtcacctttaagaa 204  Q
    |||||||||||||||||  ||||| || |||||||||||||||||    
T  33860875 tttgttttctgaatgtcctcaacttgaagatgtcacctttaagaa 33860919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 34146805 - 34146849
Alignment:
Q  160 tttgttttctgaatgtctccaactcgaggatgtcacctttaagaa 204  Q
    |||||||||||||||||  ||||| || |||||||||||||||||    
T  34146805 tttgttttctgaatgtcctcaacttgaagatgtcacctttaagaa 34146849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 34180533 - 34180489
Alignment:
Q  160 tttgttttctgaatgtctccaactcgaggatgtcacctttaagaa 204  Q
    |||||||||||||||||  ||||| || |||||||||||||||||    
T  34180533 tttgttttctgaatgtcctcaacttgaagatgtcacctttaagaa 34180489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 35082996 - 35082952
Alignment:
Q  160 tttgttttctgaatgtctccaactcgaggatgtcacctttaagaa 204  Q
    ||||||||| |||||||||||||| || || ||||||||||||||    
T  35082996 tttgttttccgaatgtctccaacttgaagacgtcacctttaagaa 35082952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 42797264 - 42797300
Alignment:
Q  164 ttttctgaatgtctccaactcgaggatgtcaccttta 200  Q
    |||||||||||||||||||| || |||||||||||||    
T  42797264 ttttctgaatgtctccaacttgaagatgtcaccttta 42797300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 43028104 - 43028152
Alignment:
Q  160 tttgttttctgaatgtctccaactcgaggatgtcacctttaagaattgc 208  Q
    |||||||||||||||||| ||||| || || |||||||||| |||||||    
T  43028104 tttgttttctgaatgtcttcaacttgaagacgtcacctttacgaattgc 43028152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 12409355 - 12409232
Alignment:
Q  86 tctggactgaaaaatttgacaacaattgtgtttgatggaatccgtgattgtctccaacgtttttccatgccccttttgttttctgaatgtctccaactcg 185  Q
    |||||||||||| ||||||| ||||||||||| || ||| ||  ||| ||||||| || |  |  | |||| |||||||||||||||| ||||||||| |    
T  12409355 tctggactgaaacatttgacgacaattgtgttagacggactctctgaatgtctccgacttactgtcctgccacttttgttttctgaatatctccaacttg 12409256  T
Q  186 aggatgtcacctttaagaattgca 209  Q
    |||| |||||||||||||| ||||    
T  12409255 aggacgtcacctttaagaactgca 12409232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 12421415 - 12421292
Alignment:
Q  86 tctggactgaaaaatttgacaacaattgtgtttgatggaatccgtgattgtctccaacgtttttccatgccccttttgttttctgaatgtctccaactcg 185  Q
    |||||||||||| ||||||| ||||||||||| || ||| ||  ||| ||||||| || |  |  | |||| |||||||||||||||| ||||||||| |    
T  12421415 tctggactgaaacatttgacgacaattgtgttagacggactctctgaatgtctccgacttactgtcctgccacttttgttttctgaatatctccaacttg 12421316  T
Q  186 aggatgtcacctttaagaattgca 209  Q
    |||| |||||||||||||| ||||    
T  12421315 aggacgtcacctttaagaactgca 12421292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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