View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_78 (Length: 276)
Name: NF19615_low_78
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 42306629 - 42306380
Alignment:
| Q |
10 |
gaagaatattcactaaattctctatattattannnnnnnnnctaattttctcaataaaattttcataattgagtcactgcacagttaatatttcttccac |
109 |
Q |
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| T |
42306629 |
gaagaatattcactaaattctctatattattatttttttt-ctaattttctcaataaaattttcataattgagtcactgcacagttaatatttcttccac |
42306531 |
T |
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| Q |
110 |
atttctttctcatatcttgaagaatctggctgaaaagtatgatagtttaggagcgttcagaaccgcagtagccgagtaacgcaagatggattagaatctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42306530 |
atttctttctcatatcttgaagaatctggctgaagagtatgatagtttaggagcgttcagaaccgcagtagccgagtaacgcaagatggattagaatctt |
42306431 |
T |
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| Q |
210 |
caggttgtagcttctg-tgctggtcaaaatcaatacagtttcaaatacatt |
259 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42306430 |
caggttgtagcttctgttgctggtcaaaatcaatacagtttcaaatacatt |
42306380 |
T |
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