View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_80 (Length: 264)
Name: NF19615_low_80
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 40181683 - 40181452
Alignment:
| Q |
10 |
tcaacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatac |
109 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40181683 |
tcaacatcatcaacaacactttctaatcagtgttattgaaacctcttgtcaaactaaattagctgaaaccctagaagttccacctcagaatcttatatac |
40181584 |
T |
|
| Q |
110 |
ttcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttcactatgatttta |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
40181583 |
ttcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactactgttcactatgatttca |
40181484 |
T |
|
| Q |
210 |
atgttaaactaaggaagaaatacatatttttt |
241 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40181483 |
atgttaaactaaggaagaaatacatatttttt |
40181452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 40180999 - 40180938
Alignment:
| Q |
17 |
catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaac |
78 |
Q |
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||||||||| | ||| || ||||||||||| |||||||||||||||||||||| | |||||| |
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| T |
40180999 |
catcaacaacattttttactcaaagttattaaaacctcttgtcaaactaaatttgttgaaac |
40180938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 38606137 - 38606068
Alignment:
| Q |
36 |
tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat |
105 |
Q |
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| T |
38606137 |
tcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttat |
38606068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 41885617 - 41885674
Alignment:
| Q |
48 |
aaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat |
105 |
Q |
| |
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||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| |||| |
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| T |
41885617 |
aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataattttat |
41885674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 44459244 - 44459430
Alignment:
| Q |
11 |
caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact |
110 |
Q |
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|||||||| |||||| ||||| | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| |||||||| ||| |
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| T |
44459244 |
caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact |
44459343 |
T |
|
| Q |
111 |
tcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc |
197 |
Q |
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| |||||| || |||||||| |||| ||||| |||||| ||||| |||| |||||| |||||| ||||||| || || |||||| |
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| T |
44459344 |
ttataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc |
44459430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 44466777 - 44466963
Alignment:
| Q |
11 |
caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact |
110 |
Q |
| |
|
|||||||| |||||| ||||| | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| |||||||| ||| |
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| T |
44466777 |
caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact |
44466876 |
T |
|
| Q |
111 |
tcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc |
197 |
Q |
| |
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| |||||| || |||||||| |||| ||||| |||||| ||||| |||| |||||| |||||| ||||||| || || |||||| |
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| T |
44466877 |
ttataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc |
44466963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 34502688 - 34502619
Alignment:
| Q |
36 |
tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat |
105 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| ||||||||| ||| ||| | ||||| |||||||| |
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| T |
34502688 |
tcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttat |
34502619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 44459962 - 44460044
Alignment:
| Q |
36 |
tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag |
118 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| |||||||| ||| ||| | ||||| |||||||| |||| |||||| |
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| T |
44459962 |
tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag |
44460044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 44467495 - 44467577
Alignment:
| Q |
36 |
tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag |
118 |
Q |
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||||||||||||||||||| | |||||||||||| |||||||| ||| ||| | ||||| |||||||| |||| |||||| |
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| T |
44467495 |
tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag |
44467577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 46358821 - 46358971
Alignment:
| Q |
17 |
catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataa |
116 |
Q |
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||||||||| ||||| | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| |||||||| |||| |||| |
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| T |
46358821 |
catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa |
46358920 |
T |
|
| Q |
117 |
agatgctttggaaggataataaggatctcatcgatacccatgttttggaat |
167 |
Q |
| |
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|| || |||||||| |||| ||||| |||||| ||||| |||| |||||| |
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| T |
46358921 |
agttggtttggaagaataacaaggacctcatcactacccctgttctggaat |
46358971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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