View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_81 (Length: 262)
Name: NF19615_low_81
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 24496496 - 24496252
Alignment:
| Q |
5 |
gagaagcataggagttgcactttcactcacaactaatgcaattggaaattacattagtactttgcttgttactatagtaacaaaagttaccacaagaaat |
104 |
Q |
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| T |
24496496 |
gagaagcttaggagttgcactttcactcacaactaatgcaattggaaattacattagtactttgcttgttactatagtaacaaaagttaccacaagaaat |
24496397 |
T |
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| Q |
105 |
ggtaatctaggttggataccagataatctgaatagaggacatcttgactacttttactggcttttgaccattcttagctttctcaacttccttgtgtttc |
204 |
Q |
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| T |
24496396 |
ggtaatcttggttggataccagataatctgaatagaggacatcttgactacttttactggcttttgaccattcttagctttctcaacttccttgtgtttc |
24496297 |
T |
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| Q |
205 |
tatggattgcaaagaggtacaagtataagaaggtggttggaaatg |
249 |
Q |
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| T |
24496296 |
tatggattgcaaagaggtacaagtataagaaggtggttggaaatg |
24496252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 4366934 - 4366731
Alignment:
| Q |
20 |
tgcactttcactcacaactaatgcaattggaaattacattagtactttgcttgttactatagtaacaaaagttaccacaagaaatggtaatctaggttgg |
119 |
Q |
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||||||||||||||||||||||||| | |||||||| | ||||| |||||||||||||| || ||||||||||| ||||||||||| | ||| |||||| |
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| T |
4366934 |
tgcactttcactcacaactaatgcattgggaaattatgtgagtacattgcttgttactattgtgacaaaagttactacaagaaatggaagtcttggttgg |
4366835 |
T |
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| Q |
120 |
ataccagataatctgaatagaggacatcttgactacttttactggcttttgaccattcttagctttctcaacttccttgtgtttctatggattgcaaaga |
219 |
Q |
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| T |
4366834 |
attccagataatatgaataggggtcatcttgattacttctactggcttttgacaattcttagtttgatcaacttcattgtgtatctattgattgctaaga |
4366735 |
T |
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| Q |
220 |
ggta |
223 |
Q |
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|||| |
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| T |
4366734 |
ggta |
4366731 |
T |
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