View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_84 (Length: 250)
Name: NF19615_low_84
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_84 |
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| [»] scaffold0280 (1 HSPs) |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 1669 - 1909
Alignment:
| Q |
10 |
aagaatatttatactcataaactgtttataattggcaaccaagttattgttcacattgtcggtgattggacataatgttacggcttgccattggatacac |
109 |
Q |
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| T |
1669 |
aagaatatttatactcataaactgtttataattggcaaccaagttattgttcatattgtcggtgattggacataatgttacggcttgccattggatacac |
1768 |
T |
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| Q |
110 |
ccaaattaagttgttgaaaaattgaagatacaagattgttgttgcttactttcgatacaacataaaagctcgccactccatttatactttgcattgcaaa |
209 |
Q |
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| T |
1769 |
ccaaattaagttgttgaaaaattgaagatacaagattgttgttgctttctttcgatacaacataaaagctcgccactccatttatactttgcattgcaaa |
1868 |
T |
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| Q |
210 |
gacacttgtttcctttactacaggtagaatgtttccaacca |
250 |
Q |
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| T |
1869 |
gacacttgtttcctttactacaggtagaatgtttccaacca |
1909 |
T |
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Target: scaffold0148 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 26992 - 27059
Alignment:
| Q |
179 |
tcgccactccatttatactttgcattgcaaagacacttgtttcctttactacaggtagaatgtttcca |
246 |
Q |
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| T |
26992 |
tcgccattccagttatagtttgcattgcaaagacacctctttcctttactacaagtagaatggttcca |
27059 |
T |
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