View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19615_low_91 (Length: 242)
Name: NF19615_low_91
Description: NF19615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19615_low_91 |
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| [»] scaffold0280 (1 HSPs) |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2069 - 2295
Alignment:
| Q |
1 |
ttatgctcattataaatggtaaatgttcttgaacttgggtctacactaataactttgtaactaacgttgttgttggcggtgaagctaagtttacccgttg |
100 |
Q |
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| T |
2069 |
ttatgctcattataaatggtaaatgttcttgaacttgggtctacactaataactttgtaactaacgttgttgttggcggtgaagctaagtttacccgttg |
2168 |
T |
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| Q |
101 |
aggtgttgcatctaaagttgaagtatgtgaagtctccacagttgggtccggtactgagaggacaagggactgtgtttgtaccacaaggctcacaagttct |
200 |
Q |
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| T |
2169 |
agatgttgcatctaaagttgaagtatgtgaagtctgcacagatgggtctggtattgagaggataagggactgtgtttgtaccacaaggctcacaagttct |
2268 |
T |
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| Q |
201 |
tggagttggtgttgcaaatatcaataa |
227 |
Q |
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| T |
2269 |
tggagttggtgctgcaaatatcaataa |
2295 |
T |
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Target: scaffold0148 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 27262 - 27435
Alignment:
| Q |
43 |
acactaataactttgtaactaacgttgttgttggcggtgaagctaagtttaccc------gttgaggtgttgcatctaaagttgaagtatgtgaagtctc |
136 |
Q |
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|||| ||||||| |||||||||||||||| ||| ||||||||||| | ||| |||| ||| |||||||||||||||||||||| || ||||| |
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| T |
27262 |
acacgaataactctgtaactaacgttgttagcggccgtgaagctaaggtgaccttggcctgttgtggtattgcatctaaagttgaagtatgcgaggtctc |
27361 |
T |
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| Q |
137 |
cacagttgggtccggtactgagaggacaagggactgtgtttgtaccacaaggctcacaagttcttggagttggt |
210 |
Q |
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| T |
27362 |
cacagttgggtccggtactgagaggataagggactgtgtttgtaccacagggctcacaagttcttggagttggt |
27435 |
T |
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