View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19616_high_2 (Length: 407)
Name: NF19616_high_2
Description: NF19616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19616_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 391
Target Start/End: Complemental strand, 3947472 - 3947092
Alignment:
| Q |
11 |
atgaaggagcaaaaagtgactgtgaaaggaaatgtaaagccacaagatgtttttgacactgtttccaaaactggaaagaaaactgaattctgggtagaac |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3947472 |
atgaaggaacaaaaagtgactgtgaaaggaaatgtaaagccacaagatgtttttgacactgtttccaaaactggaaagaaaactgaattctgggtagaac |
3947373 |
T |
|
| Q |
111 |
ctgaaaacaatcccacagaaactgcaactgaggctgaacctgaaaacaagccttcagaagctgtaactattgaccctgttgagcatgataacaaaccttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3947372 |
ctgaaaacaatcccacagaaactgcaactgaggctgaacctgaaaacaagccttcagaagctgtaactattgaccctgttgagcctgataacaaaccttc |
3947273 |
T |
|
| Q |
211 |
tgaaactgccacagttgtctctattgagcttgagaacaaaccttctgaaactgccactgttgctgcctaagactcacgtggttctgtttttcttagaaat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3947272 |
tgaaactgccacagttgtctctattgagcctgagaacaaaccttctgaaactgccactgttgctgcctaagactcatgtggttctgtttttcttagaaat |
3947173 |
T |
|
| Q |
311 |
aagtctattttaattttgaatgatgtttgatgttcatgtgataaatactttcaatgtgatgtgttactggtagtggtatat |
391 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3947172 |
aagtctattttaattttgaatgatgtttggtgttcatgtgataaatactttcaatgtgatgtgttactggtagtggtatat |
3947092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 226 - 363
Target Start/End: Complemental strand, 3940578 - 3940442
Alignment:
| Q |
226 |
tgtctctattgagcttgagaacaaaccttctgaaactgccactgttgctgcctaagactcacgtggttctgtttttcttagaaataagtctattttaatt |
325 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3940578 |
tgtctctattgagactgaga-caaaccttctgaaactgcccctgttgctgcctaagactcacgtggttctgtttttcttagaaataagtctattttaatt |
3940480 |
T |
|
| Q |
326 |
ttgaatgatgtttgatgttcatgtgataaatactttca |
363 |
Q |
| |
|
| |||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
3940479 |
tcaaatgatttttgatgttaatgtgataaatagtttca |
3940442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 18602729 - 18602683
Alignment:
| Q |
15 |
aggagcaaaaagtgactgtgaaaggaaatgtaaagccacaagatgtt |
61 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
18602729 |
aggaacaaaaggtgactgttaaaggaaatgtaaacccacaagatgtt |
18602683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University