View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19616_low_1 (Length: 615)
Name: NF19616_low_1
Description: NF19616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19616_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 18 - 597
Target Start/End: Original strand, 39987852 - 39988431
Alignment:
| Q |
18 |
aaagaagatgaagctttggctataaactgtgtaaactctttacattcgatatccggagccggaaaccaccgtgatttgtttatatctttgcttcgtgggt |
117 |
Q |
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| T |
39987852 |
aaagaagatgaagctttggctataaactgtgtaaactctttacattcgatatccggagccggaaaccaccgtgatttgtttatatctttgcttcgtgggt |
39987951 |
T |
|
| Q |
118 |
tagaacctagggttttaactattgttgaagaagaagctgatttagaagtttgttttggttcggatttcgtggaaggttttaaagagtgtttaagatggtt |
217 |
Q |
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| T |
39987952 |
tagaacctagggttttaactattgttgaagaagaagctgatttagaagtttgttttggttcggatttcgtggaaggttttaaagagtgtttaagatggtt |
39988051 |
T |
|
| Q |
218 |
tagggtttattttgaagcacttgatgaaagtttttcaagaacaagtagtgagaggttgatgctagaaagagaagctgggagaggtattgttgatttggtt |
317 |
Q |
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| T |
39988052 |
tagggtttattttgaagcacttgatgaaagtttttcaagaacaagtagtgagaggttgatgctagaaagagaagctgggagaggtattgttgatttggtt |
39988151 |
T |
|
| Q |
318 |
gcttgtgatccttatgagtcagtggagagacgtgaaacggcggcgcggtggaggaggaggttgcatggtggcgggtttaatacggtgtcgtttagtgatg |
417 |
Q |
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| T |
39988152 |
gcttgtgatccttatgagtcagtggagagacgtgaaacggcggcgcggtggaggaggaggttgcatggtggcgggtttaatacggtgtcgtttagtgatg |
39988251 |
T |
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| Q |
418 |
aagtttgtgatgatgttagggctttattgagaaggtataaagaagggtggtcgatgacatcctccgatggtgataccggaatattcttgtcgtggaagga |
517 |
Q |
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| T |
39988252 |
aagtttgtgatgatgttagggctttattgagaaggtataaagaagggtggtcgatgacatcctccgatggtgataccggaatattcttgtcgtggaagga |
39988351 |
T |
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| Q |
518 |
taagccggtggtgtgggccagtgtatggaggccttgaggtggcgctgacgtggcatgggtgattcacacgtgctctaaat |
597 |
Q |
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| T |
39988352 |
taagccggtggtgtgggccagtgtatggaggccttgaggtggcgctgacgtggcatgggtgattcacacgtgctctaaat |
39988431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 192 - 554
Target Start/End: Complemental strand, 5365287 - 5364928
Alignment:
| Q |
192 |
ggttttaaagagtgtttaagatggtttagggtttattttgaagcacttgatgaaagtttttcaagaacaagtagtgagaggttgatgctagaaagagaag |
291 |
Q |
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| T |
5365287 |
ggttttgaagagtgtttaaggtggtttagggtttactttgaagcattagaagagagttttccgaagacgagtaacgagcgtttgatgcttgaaagggaag |
5365188 |
T |
|
| Q |
292 |
ctgggagaggtattgttgatttggttgcttgtgatccttatgagtcagtggagagacgtgaaacggcggcgcggtggaggaggaggttgcatggtggcgg |
391 |
Q |
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| T |
5365187 |
cagggagagggatagttgatttggtggcatgtgctccggcggagtcgattgaacggagagaaactgcggtgaggtggtcacggcgtttgcatggtcgagg |
5365088 |
T |
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| Q |
392 |
gtttaatacggtgtcgtttagtgatgaagtttgtgatgatgttagggctttattgagaaggtataaagaagggtggtcgatgacatcctccgatg--gtg |
489 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| | || || || |
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| T |
5365087 |
gtttaatacggtggcgtttagtgaggaagtttgtgatgatgttagggctttgttgaggaggtataaggaagggtggtcgatga-----tacggtgtaatg |
5364993 |
T |
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| Q |
490 |
ataccggaatattcttgtcgtggaaggataagccggtggtgtgggccagtgtatggaggccttga |
554 |
Q |
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|| |||||||||||||| |||||||||| | ||||||||||||||||||| ||||||||||||| |
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| T |
5364992 |
atgccggaatattcttgacgtggaaggaacaaccggtggtgtgggccagtgcatggaggccttga |
5364928 |
T |
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