View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19616_low_4 (Length: 316)

Name: NF19616_low_4
Description: NF19616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19616_low_4
NF19616_low_4
[»] chr8 (1 HSPs)
chr8 (8-302)||(39715709-39716003)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 39716003 - 39715709
Alignment:
Q  8 gacatcatcaaaagatcagacacaaaagtgacgtctttgttgatgttttaggtaannnnnnnnnnnnnnngtcaaattactttgtctcagcatgacataa 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||    
T  39716003 gacaccatcaaaagatcagacacaaaagtgacgtctttgttgatgttttaggtaatttttccttttttttgtcaaattactttgtctcagcatgacataa 39715904  T
Q  108 taaggcctagtaagaagtacctttcttctgttttatataaaacataagaaacattttcaaaactccatcggaaagtaagtaatatatgataaattttaca 207  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39715903 taaggcctagtaggaagtacctttcttctgttttatataaaacataagaaacattttcaaaactccatcggaaagtaagtaatatatgataaattttaca 39715804  T
Q  208 ggtgaagatgagagcaaaatttcttttggacaattaagaaggttttctttgcgagaactccaactcgcaactaaaagtttcagcgaaagcaatgt 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39715803 ggtgaagatgagagcaaaatttcttttggacaattaagaaggttttctttgcgagaactccaactcgcaactaaaagtttcagcgaaagcaatgt 39715709  T

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