View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19616_low_5 (Length: 237)
Name: NF19616_low_5
Description: NF19616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19616_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 6808624 - 6808414
Alignment:
| Q |
16 |
atgatgatgatggtataccaatattcctaaaaaagcctgttttcaaactatatgctgtagcatcacttgttgcactttgctcctctgtcatggctcttgt |
115 |
Q |
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| T |
6808624 |
atgatgatgatggtataccaatattcctaaaaaagcctgttttcaaactatatgctgtagcatcacttgttgcactttgctcctctgtcatggctcttgt |
6808525 |
T |
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| Q |
116 |
tatgtttctttcgatactaacgtctcggtttcaagaaaaggattttcttgtggacttaccaaaaaagcttcttctagggttgactacactcttcacatct |
215 |
Q |
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| T |
6808524 |
tatgtttctttcgatactaacgtctcggtttcaagaaaaggattttcttgtggacttaccaaaaaagcttcttctagggttgactacactcttcacatct |
6808425 |
T |
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| Q |
216 |
atagcatctgt |
226 |
Q |
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||||||||||| |
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| T |
6808424 |
atagcatctgt |
6808414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 46 - 227
Target Start/End: Complemental strand, 6830983 - 6830802
Alignment:
| Q |
46 |
aaaagcctgttttcaaactatatgctgtagcatcacttgttgcactttgctcctctgtcatggctcttgttatgtttctttcgatactaacgtctcggtt |
145 |
Q |
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| T |
6830983 |
aaaagcctgctttcaaactctatgctgtagcatcacttgttgcactttgctcctctgtcacagcccttgttttgtttctttccatactcacatctcggtt |
6830884 |
T |
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| Q |
146 |
tcaagaaaaggattttcttgtggacttaccaaaaaagcttcttctagggttgactacactcttcacatctatagcatctgtg |
227 |
Q |
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| T |
6830883 |
tgaagaaaaagattttgttattgacttaccaagaaagcttcttgtagggttgactacactcttcacatctatagcatctgtg |
6830802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 6816576 - 6816374
Alignment:
| Q |
25 |
atggtataccaatattcctaaaaaagcctgttttcaaactatatgctgtagcatcacttgttgcactttgctcctctgtcatggctcttgttatgtttct |
124 |
Q |
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||||||||||| |||| | ||| | |||| || |||||| ||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||||| |
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| T |
6816576 |
atggtataccactatttatgaaagaacctgcttacaaactctatgctgcagcatcacttgttgcactttgcttctctgtcacagctcttgtttcgtttct |
6816477 |
T |
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| Q |
125 |
ttcgatactaacgtctcggtttcaagaaaaggattttcttgtggacttaccaaaaaagcttcttctagggttgactacactcttcacatctatagcatct |
224 |
Q |
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||||||||| || ||| ||||| ||||||| |||||| ||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6816476 |
ttcgatactcacatctaggtttgaagaaaaagattttgttgtggacttaccaagaaggcttcttgtagggttgactacactcttcacatctatagcatct |
6816377 |
T |
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| Q |
225 |
gtg |
227 |
Q |
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||| |
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| T |
6816376 |
gtg |
6816374 |
T |
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