View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19617_high_16 (Length: 220)

Name: NF19617_high_16

Description: NF19617

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19617_high_16

[»] chr5 (4 HSPs)

[»] chr8 (2 HSPs)

Alignment Details

Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 4)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 67; E-Value: 6e-30

Query Start/End: Original strand, 106 - 220

Target Start/End: Original strand, 36621507 - 36621621

Alignment:

Q	106	tcaagaacggagcacacaatcatcatgttgaacattgtctggattaaaagaggcatattgaagaacctcaaattcatgttcaaacttggccatataattc	205	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\|
T	36621507	tcaagaacggagcacacagtcatcacttccaacattgtttggattaagagaggcatattgaagaagctcaaaatcatgttcaaatttagccatatatttc	36621606	T

Q	206	tcttccatgttcaca	220	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36621607	tcttccatgttcaca	36621621	T

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Target: chr5; HSP #2

Raw Score: 63; E-Value: 2e-27

Query Start/End: Original strand, 138 - 220

Target Start/End: Original strand, 36626773 - 36626855

Alignment:

Q	138	cattgtctggattaaaagaggcatattgaagaacctcaaattcatgttcaaacttggccatataattctcttccatgttcaca	220	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36626773	cattgtttggattaaaagacgcatattgaagaagctcaaattcatgttcaaacttagccatataattatcttccatgttcaca	36626855	T

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Target: chr5; HSP #3

Raw Score: 49; E-Value: 3e-19

Query Start/End: Original strand, 52 - 112

Target Start/End: Complemental strand, 36628548 - 36628488

Alignment:

Q	52	gaataaatctagaatgtttgagtttaaagaaacaagaataaattcgatacttattcaagaa	112	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	36628548	gaataaatcttaaatgtttgagtttaaagaaacaagaataaattcgatacttattgaagaa	36628488	T

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Target: chr5; HSP #4

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 118 - 220

Target Start/End: Original strand, 36631994 - 36632096

Alignment:

Q	118	cacacaatcatcatgttgaacattgtctggattaaaagaggcatattgaagaacctcaaattcatgttcaaacttggccatataattctcttccatgttc	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\| \|\|\| \| \|\| \|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|
T	36631994	cacacaatcatcatctctaacattgtttggatcaagagaggtatactcaaaaagctcaaagtcatgttcaaacttagccatataattatctttcatgttc	36632093	T

Q	218	aca	220	Q
		\|\|\|
T	36632094	aca	36632096	T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 44; E-Value: 3e-16

Query Start/End: Original strand, 125 - 220

Target Start/End: Complemental strand, 34330216 - 34330121

Alignment:

Q	125	tcatcatgttgaacattgtctggattaaaagaggcatattgaagaacctcaaattcatgttcaaacttggccatataattctcttccatgttcaca	220	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	34330216	tcatcatgttaaacattggttggattaagagaggcatattgaagaagcttcacttcatgctcaaacttagtcatatcattctcttccatattcaca	34330121	T

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Target: chr8; HSP #2

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 136 - 220

Target Start/End: Complemental strand, 34321297 - 34321213

Alignment:

Q	136	aacattgtctggattaaaagaggcatattgaagaacctcaaattcatgttcaaacttggccatataattctcttccatgttcaca	220	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34321297	aacattgcttggattcaaagaggcatgtcgaagaagctcaacttcatgctcaaacttagtcatgtaattgtcttccatgttcaca	34321213	T

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