View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19617_high_17 (Length: 219)
Name: NF19617_high_17
Description: NF19617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19617_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 7666948 - 7667030
Alignment:
| Q |
17 |
agacaaaattagatgaggaaatatcaatctaaaaaataacatcaaagtcccctttggaaactcaaaggaagttaccttcaacc |
99 |
Q |
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| T |
7666948 |
agacaaaattagatgaggaaatatcaatctaaaaaataacatcaaagtcccctttggaaactcaaaggaagttaccttcaacc |
7667030 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 7087180 - 7087259
Alignment:
| Q |
19 |
acaaaattagatgaggaaatatcaatctaaaaaataacatcaaagtcccctttggaaactcaaaggaagttaccttcaacc |
99 |
Q |
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| T |
7087180 |
acaaaactagatgaggaaatatcaacatcaaaactaacaccaaagtcccatttggaaactcaaaggaagtt-ccttcaacc |
7087259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 7087326 - 7087362
Alignment:
| Q |
166 |
tactagccaaccgaatcaacatacaaaagcatcttct |
202 |
Q |
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| T |
7087326 |
tactagccaaccgaatcaacataccaaagcatcttct |
7087362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 7667097 - 7667133
Alignment:
| Q |
166 |
tactagccaaccgaatcaacatacaaaagcatcttct |
202 |
Q |
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| T |
7667097 |
tactagccaaccgaatcaacatgcaaaagcatcttct |
7667133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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