View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19617_high_5 (Length: 341)
Name: NF19617_high_5
Description: NF19617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19617_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 40265876 - 40265565
Alignment:
| Q |
13 |
aatatagtcacaaggagaaatataaattacacctagctagtattgtaactttnnnnnnntaaactgaccgatattttattttaatattactaatatcaga |
112 |
Q |
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| T |
40265876 |
aatatagtcacaaggagaaatataaatgacacctagctagtattgtaactttaaaaaaataaactgaccaatattttattttaatattactaatatcaga |
40265777 |
T |
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| Q |
113 |
agaaagaaaaaactagaagatatcgcatagatgaaataatggattataatatgtacatatatatgttaaacaaaattaaaatttaatggggggctgttaa |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40265776 |
agaaagaaaaaactagaagatatcgcatagctgaaataatggattataatatgtacatatatatgttaaacaaaattaaaatttaatggggggctgttaa |
40265677 |
T |
|
| Q |
213 |
gagttcagaacatttggtcacgcttcagatgttcagttctcgatatgaggggggtgttaagagttcgacattagataagataaaccgtaaatatgagttt |
312 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
40265676 |
gagttcagaatatttggtcacgcttcagatgttcagttctcgatatgagggggatgttaagagttccacgttagataagataaaccgtaaatatgagttt |
40265577 |
T |
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| Q |
313 |
ataggtagaagc |
324 |
Q |
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|||||||||||| |
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| T |
40265576 |
ataggtagaagc |
40265565 |
T |
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