View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19617_high_6 (Length: 332)
Name: NF19617_high_6
Description: NF19617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19617_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 54572186 - 54571880
Alignment:
| Q |
12 |
acagagtaaagaaaggaagggccaacaaggctattccgagcatccaccaaaaagcgttgaacctctttaatggctttctttctggtattagacaatgaag |
111 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54572186 |
acagagtggagaaaggaagggccaacaaggttattccgagcatccaccaaaaagcgttgaacctctttaatggctttctttctggtattagacaatgaag |
54572087 |
T |
|
| Q |
112 |
caagtctgagcatggtttgtgaatcaacaagggaatcattgataagcgttttccagagtctccattttggagataacaaataacttccctcctccaattt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
54572086 |
caagtctgagcatggtttgtgaatcaacaagggaatcattgataagcgttttccagagtctccattttggagttaacaaataacttccctcctccaattt |
54571987 |
T |
|
| Q |
212 |
ttgaaacctacggttccatattctgtcaactgctgctttgaggtagttagatttaccacctgtttcaaggtacttaactgtacattccacagcaatgtag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54571986 |
ttgaaacctacggttccatattctgtcaactgctgcttggaggtagttagatgtaccacctgcttcaaggtacttaactgtacattccacagcaatgtag |
54571887 |
T |
|
| Q |
312 |
aaataag |
318 |
Q |
| |
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||||||| |
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| T |
54571886 |
aaataag |
54571880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 55155453 - 55155147
Alignment:
| Q |
12 |
acagagtaaagaaaggaagggccaacaaggctattccgagcatccaccaaaaagcgttgaacctctttaatggctttctttctggtattagacaatgaag |
111 |
Q |
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|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55155453 |
acagagtggagaaaggaagggccaacaaggttattccgagcatccaccaaaaagcgttgaacctctttaatggctttctttctggtattagacaatgaag |
55155354 |
T |
|
| Q |
112 |
caagtctgagcatggtttgtgaatcaacaagggaatcattgataagcgttttccagagtctccattttggagataacaaataacttccctcctccaattt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
55155353 |
caagtctgagcatggtttgtgaatcaacaagggaatcattgataagcgttttccagagtctccattttggagttaacaaataacttccctcctccaattt |
55155254 |
T |
|
| Q |
212 |
ttgaaacctacggttccatattctgtcaactgctgctttgaggtagttagatttaccacctgtttcaaggtacttaactgtacattccacagcaatgtag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
55155253 |
ttgaaacctacggttccatattctgtcaactgctgcttggaggtagttagatgtaccacctgcttcaaggtacttaactgtacattccacagcaatgtag |
55155154 |
T |
|
| Q |
312 |
aaataag |
318 |
Q |
| |
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||||||| |
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| T |
55155153 |
aaataag |
55155147 |
T |
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