View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19617_high_8 (Length: 297)
Name: NF19617_high_8
Description: NF19617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19617_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 40789193 - 40788897
Alignment:
| Q |
1 |
catgcctatttccttgagttttaatttgaatttgaatagacttggctttaaagtt-gatcatatgaagagagtggggtgagctcaaccaagtcactacca |
99 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40789193 |
catgcctatttccttgggttttaatttaaatttgaatagacttggctttaaagtttgatcatatgaagagagtggggtgagctcaaccaagtcacaacca |
40789094 |
T |
|
| Q |
100 |
gt-----atcacttaatcagccgtatctaacttcaaaactagacacaagctaccataatatgcttctcaatctaaggacaacatgtaacacattcttctt |
194 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40789093 |
gtgatcaatcacttaatcagccgtatctaacttcaaaactagacacaagctaccataatatacttctcaatctaaggacaacatgtaacacattcttctt |
40788994 |
T |
|
| Q |
195 |
aataaatttgaaagtttcatgtcacttttaaacaagatgattatgttgcaagaaatatactttctaaaaattatgtataaacaatgattcatctcac |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40788993 |
aataaatttgaaagtttcatgtcacttttaaacaagatgattatgttccaagaaatatactttctaaaaattatgtataaacaatgattcatctcac |
40788897 |
T |
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