View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19617_low_1 (Length: 703)
Name: NF19617_low_1
Description: NF19617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19617_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 634; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 24 - 698
Target Start/End: Complemental strand, 27747640 - 27746966
Alignment:
| Q |
24 |
caaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataacattctccttccccattttgtccttccnnnnnnnaaattttag |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
27747640 |
caaaacgtggatcatcactatatgtactgtttggaactttaccctcatcaataataacattctcctttcccattttgtccttcctttttttaaattttag |
27747541 |
T |
|
| Q |
124 |
actatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctcttctttgcttgctttgtcaacagcaactatatccatatga |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27747540 |
actatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctcttctttgcttgctttgtcaacagcaactatatccatatga |
27747441 |
T |
|
| Q |
224 |
ttgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaatgaactcatttgctgctttaataacttgttgatcactatcatcat |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27747440 |
ttgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaatgaactcatttgctgcttcaataacttgttgatcactatcatcat |
27747341 |
T |
|
| Q |
324 |
ctgatgaatacttcgatttgttcttcttggccttctttttctcatgccttttccttcgagatgcttcccaaactgtttccttatccttcttttccattaa |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27747340 |
ctgatgaatacttcgatttgttcttcttggccttctttttctcatgccttttccttcgagatgcttcccaaactgtttccttatccttcttttccattaa |
27747241 |
T |
|
| Q |
424 |
ttttttatttagactttccaatcctgaatggaaggtcacctccatctcttggccaatgtcatgttcagcatcttcatctgaaccattgcccgaatagacc |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27747240 |
ttttttatttagactttccaatcctgaatggaaggtcacctccatctcttggccaatgtcatgttcagcatcttcatctgaaccattgcccgaatagacc |
27747141 |
T |
|
| Q |
524 |
aaattaagatatatagattgttttttagccttttcatcaagttgatcatcagcctcggtgttatcatcactttcactcgcatccgaagccaagtaatctt |
623 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27747140 |
aaattaagatatatagattgttttctagccttttcatcaagttgatcatcagcctcggtgttatcatcactttcactcgcatccgaagccaagtaatctt |
27747041 |
T |
|
| Q |
624 |
tccattctaactgagcaagctattattagcatatgggaaaagaagaaaaagtacattttagtatgaaacaaattt |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27747040 |
tccattctaactgagcaagctattattagcatatgggaaaagaagaaaaagtacattttagtatgaaacaaattt |
27746966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 38527379 - 38527452
Alignment:
| Q |
126 |
tatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctcttctttgcttgctttg |
199 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
38527379 |
tatatcccttgagaccagtacctgtccccttgtcatcagcaagcaacagttcaagctcttctttgcttgctttg |
38527452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 224 - 698
Target Start/End: Complemental strand, 49518065 - 49517582
Alignment:
| Q |
224 |
ttgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaatga---actcatttgctgctttaataacttgttgatcactatcat |
320 |
Q |
| |
|
|||||| |||||||| ||| || ||||||||||||||||||| |||||||||||||| |||||| |||| ||| | || |||||||||||||||||| |
|
|
| T |
49518065 |
ttgtcatttttactcatttgtgctttcttcctcttcttaacacaaggttcctcaatgaggaactcatctgcttcttcattagcttgttgatcactatcat |
49517966 |
T |
|
| Q |
321 |
catctgatgaatacttcgatttgttcttcttggccttctttttctcatgccttttccttcgagatgcttcccaaactgtttcc------ttatccttctt |
414 |
Q |
| |
|
||||||||||||||||| |||| || ||||||||||||||||||||| |||||||||| ||| || ||||||||||||||||| || |||||||| |
|
|
| T |
49517965 |
catctgatgaatacttcaatttatttttcttggccttctttttctcacgccttttcctccgaaattcttcccaaactgtttccgatcttttgtccttctt |
49517866 |
T |
|
| Q |
415 |
ttccattaattttttatttagactttccaatcctgaatggaaggtcacctccatctcttggccaatgtcatgttcagcatcttcatctgaaccattgccc |
514 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
49517865 |
ttccgttaattttttatttagacattccaatcctgaatggaaggtcacctccatctcttggctagcgtcatgttcagcatcttcatttgaaccattgcct |
49517766 |
T |
|
| Q |
515 |
gaatagaccaaattaagatatatagattgttttttagccttttcatcaagttgatcatcagcctcggtgttatcatcactttcactcgcatccgaagcca |
614 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||| ||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
49517765 |
gaatagaccaaactaagatacatatcttgttttctagccttctcatcaagctgatcatcagtctcactgttatcatcactttcactcgcatcagaagcca |
49517666 |
T |
|
| Q |
615 |
agtaatctttccattctaactgagcaagctattattagcatatgggaaaagaag-aaaaagtacattttagtatgaaacaaattt |
698 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||| |||| | ||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
49517665 |
agtattctttctattccaactgagcaagctatta-aagcagaagggaaaagaagaaaaaagtacatttcagtatgaaacaaattt |
49517582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 49518280 - 49518111
Alignment:
| Q |
13 |
aagaagtgcaacaaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataacattctccttccccattttgtccttccnnnnn |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49518280 |
aagaagtgcaacaaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataacattctccttccccattttgtccttccttttt |
49518181 |
T |
|
| Q |
113 |
nnaaattttagactatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagct |
182 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| || |||||||||||| |||||||| ||||||| |
|
|
| T |
49518180 |
ttaaattttagattatatcccttgagaccagtttctatccccttgtcatcaggaagcaatagttcaagct |
49518111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University