View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19617_low_11 (Length: 291)

Name: NF19617_low_11
Description: NF19617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19617_low_11
NF19617_low_11
[»] chr4 (1 HSPs)
chr4 (9-274)||(22362039-22362307)
[»] chr2 (7 HSPs)
chr2 (154-265)||(39814908-39815019)
chr2 (154-265)||(39805623-39805734)
chr2 (154-265)||(39825987-39826098)
chr2 (154-265)||(39902548-39902659)
chr2 (154-265)||(39911006-39911117)
chr2 (154-265)||(39922149-39922260)
chr2 (154-265)||(39927845-39927956)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 22362307 - 22362039
Alignment:
Q  9 gattattctccgctcaaaatacctgatatcggtgtttttcacgtcaatctcaccgcggtatgcaaacaaacaagaccttacatattttaaccatgatctt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22362307 gattattctccgctcaaaatacctgatatcggtgtttttcacgtcaatctcaccgcggtatgcaaacaaacaagaccttacatattttaaccatgatatt 22362208  T
Q  109 gctg---ggttcttattcatcttttctttttcatgcgttgtgtatgttagggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccat 205  Q
    ||||   |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22362207 gctgctgggttcttattcatcttttctatttcatgcattgtgtatgttagggatcaatgatggcaccacatgtgaatccaagtgcaacagagtataccat 22362108  T
Q  206 agtattaagaggttatggaagaattcagatactatttccaaacggaagcaatgcaatggaagcagaaat 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22362107 agtattaagaggttatggaagaattcagatactatttccaaacggaagcaatgcaatggaagcagaaat 22362039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 265
Target Start/End: Original strand, 39814908 - 39815019
Alignment:
Q  154 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 253  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  |||||| |||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39814908 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtcttaagaggttctggtagaattcaaatagtgtttccaaatggaac 39815007  T
Q  254 caatgcaatgga 265  Q
    ||||||||||||    
T  39815008 caatgcaatgga 39815019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 265
Target Start/End: Original strand, 39805623 - 39805734
Alignment:
Q  154 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 253  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  ||||||  ||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39805623 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac 39805722  T
Q  254 caatgcaatgga 265  Q
    ||||||||||||    
T  39805723 caatgcaatgga 39805734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 265
Target Start/End: Original strand, 39825987 - 39826098
Alignment:
Q  154 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 253  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  ||||||  ||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39825987 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac 39826086  T
Q  254 caatgcaatgga 265  Q
    ||||||||||||    
T  39826087 caatgcaatgga 39826098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 265
Target Start/End: Original strand, 39902548 - 39902659
Alignment:
Q  154 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 253  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  ||||||  ||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39902548 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac 39902647  T
Q  254 caatgcaatgga 265  Q
    ||||||||||||    
T  39902648 caatgcaatgga 39902659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 265
Target Start/End: Original strand, 39911006 - 39911117
Alignment:
Q  154 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 253  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  ||||||  ||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39911006 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac 39911105  T
Q  254 caatgcaatgga 265  Q
    ||||||||||||    
T  39911106 caatgcaatgga 39911117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 265
Target Start/End: Original strand, 39922149 - 39922260
Alignment:
Q  154 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 253  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  ||||||  ||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39922149 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac 39922248  T
Q  254 caatgcaatgga 265  Q
    ||||||||||||    
T  39922249 caatgcaatgga 39922260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 265
Target Start/End: Original strand, 39927845 - 39927956
Alignment:
Q  154 agggatcaatgatggcaccacatgtgaatccaagtgcaacagaatataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag 253  Q
    ||||||| |||||| |||| ||||| |||||||| |||||||| |||  ||||||  ||||||||| ||| |||||||| ||| | |||||||| ||||     
T  39927845 agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac 39927944  T
Q  254 caatgcaatgga 265  Q
    ||||||||||||    
T  39927945 caatgcaatgga 39927956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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