View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19617_low_13 (Length: 260)
Name: NF19617_low_13
Description: NF19617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19617_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 34589936 - 34590059
Alignment:
| Q |
114 |
ttgacccatgtaaccattgttgaaaagattctaagatctttaacataaagatttaattatgttgttttctcaatagaagaattgaatgatgcaactacga |
213 |
Q |
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| T |
34589936 |
ttgacccatataaccattgttgaaaagattctaagatctttaacataaagatttaattatgttgttttctcaatagaagaattgaatgatgcaactacga |
34590035 |
T |
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| Q |
214 |
tgacaattgacgagttacaaagta |
237 |
Q |
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| T |
34590036 |
tgacaattgacgagttacaaagta |
34590059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 34589788 - 34589890
Alignment:
| Q |
13 |
aatatcaatgttctaataaggtgaagagagatcaacttcgagctctatgcgaagaatttgagaatcttagcatgaagattgatgaatctctaaaggaata |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34589788 |
aatatcaatgttctaataaggtgaagagagatcaacttcgagctctatgcgaagaatttgagaatcttagcatgaagattgatgaatctctaaaggaata |
34589887 |
T |
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| Q |
113 |
ctt |
115 |
Q |
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||| |
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| T |
34589888 |
ctt |
34589890 |
T |
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