View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19617_low_16 (Length: 227)
Name: NF19617_low_16
Description: NF19617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19617_low_16 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 28148868 - 28148656
Alignment:
| Q |
1 |
gcatccttgattcaaatatattgtcatggtgattggattcagaagtggtaagcacaggatttctggacttcaatcctaacctcaaaatatttattagtat |
100 |
Q |
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| T |
28148868 |
gcatccttgattcaaatatattgtcatggtgattggattcagaagtggtaagcacaggatttctggacttcaatcctaacctcaaactatttattagtat |
28148769 |
T |
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| Q |
101 |
ttatttacctgtggagaagtcaacttgtgttccaatgctgtttgaacttcaatcccaaccacaacatctttcgtggtttgtggactaggattttcattac |
200 |
Q |
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| T |
28148768 |
tta----cctgtggagaagtcaacttgtgttccgatgctgtttgaacttcaatcccaaccacaaaatctttcgtggtttgtggactaggattttcattac |
28148673 |
T |
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| Q |
201 |
cactatcgtggcctttg |
217 |
Q |
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||||||||||||||||| |
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| T |
28148672 |
cactatcgtggcctttg |
28148656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 28054366 - 28054297
Alignment:
| Q |
24 |
tcatggtgattggattcagaagtggtaagcacaggatttctggacttcaatcctaacctcaaaatattta |
93 |
Q |
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| T |
28054366 |
tcatggtggttggattgatatgtggtaagcacaggatttctggacttcaatcgcaatctcaaaatattta |
28054297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 28064791 - 28064722
Alignment:
| Q |
24 |
tcatggtgattggattcagaagtggtaagcacaggatttctggacttcaatcctaacctcaaaatattta |
93 |
Q |
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| T |
28064791 |
tcatggtggttggattgatatgtggtaagcacaggatttctggacttcaatcgcaatctcaaaatattta |
28064722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 26234158 - 26234213
Alignment:
| Q |
102 |
tatttacctgtggagaagtcaacttgtgttccaatgctgtttgaacttcaatccca |
157 |
Q |
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| T |
26234158 |
tattgacctgtggagaagtcaactggtgttctaatgctttttgaacttcactccca |
26234213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 26114287 - 26114397
Alignment:
| Q |
107 |
acctgtggagaagtcaacttgtgttccaatgctgtttgaacttcaatcccaaccacaacatctttcgtggtttgtggactaggattttcattaccactat |
206 |
Q |
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| T |
26114287 |
acctgtggagaagtcaactggtgttccgatgcttcttgaatttcactcccagcagcaaaatctttagttgtttctgcacttggattttcatcaccaccat |
26114386 |
T |
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| Q |
207 |
cgtggcctttg |
217 |
Q |
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| T |
26114387 |
tgttgcctttg |
26114397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 26111865 - 26111965
Alignment:
| Q |
102 |
tatttacctgtggagaagtcaacttgtgttccaatgctgtttgaacttcaatcccaaccacaacatctttcgtggtttgtggactaggattttcattacc |
201 |
Q |
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|||| ||||||||| |||| ||||||||||| ||||| |||| ||||| ||||| | ||| |||||| ||||||| || ||| |||||||||| ||| |
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| T |
26111865 |
tattcacctgtggacaagttaacttgtgttctgatgcttcttgatcttcactcccagcagcaaaatcttttgtggtttctgcacttggattttcatcacc |
26111964 |
T |
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| Q |
202 |
a |
202 |
Q |
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| T |
26111965 |
a |
26111965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 18307 - 18204
Alignment:
| Q |
112 |
tggagaagtcaacttgtgttccaatgctgtttgaacttcaatcccaaccacaacatctttcgtggtttgtggactaggattttcattaccactatcgtgg |
211 |
Q |
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| T |
18307 |
tggagaagtcaactcgtgttctgatgatgctttaacttcaaccccagcttcaaaatcttttgtggtttgtggactaggattttcattaccactatcgtgg |
18208 |
T |
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| Q |
212 |
cctt |
215 |
Q |
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|||| |
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| T |
18207 |
cctt |
18204 |
T |
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