View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19617_low_17 (Length: 223)
Name: NF19617_low_17
Description: NF19617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19617_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 44144607 - 44144786
Alignment:
| Q |
23 |
agagaagaagctttgcaagaaattttacttggcctgtaatttaacaagaagtttctctccttacatggattaaaccagataaagttttgtacatactgga |
122 |
Q |
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| T |
44144607 |
agagaagaagctttgcaagaaattttacttggcctgtaatttaacaagaagtttctctccttagatggattaaaccagataaagttttgtacatactgga |
44144706 |
T |
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| Q |
123 |
atttgacatcatagccttacaaaacgaggcgttattatctaatttttgcaacaaaaatatttacttccatgacatcatca |
202 |
Q |
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||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44144707 |
attcgacatcatagccttaggaaacaaggcgttattatctaatttttgcaacaaaaatatttacttccacgacatcatca |
44144786 |
T |
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