View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19617_low_3 (Length: 498)
Name: NF19617_low_3
Description: NF19617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19617_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 33785675 - 33786140
Alignment:
| Q |
19 |
taattctcttaaatccacattatcaactttcactgatcctctttcaacatcatagaatctttgtattaatgcaataacagttgattttccacatccactt |
118 |
Q |
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| T |
33785675 |
taattctcttaaatccacattatcaactttcactgatcctctttcaacatcatagaatctttgtattaatgcaataacagttgattttccacatccactt |
33785774 |
T |
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| Q |
119 |
tttccaactagtccaacactttttccaggtcttacctctaagcaaaatttgcgcaaaatcggtgtttttgctctgcttggatatgaaaaatcaacattct |
218 |
Q |
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| T |
33785775 |
tttccaactagtccaacactttttccaggtcttacctctaagcaaaatttgcgcaaaatcggtgtttttgctctgcttggatatgaaaaatcaacattct |
33785874 |
T |
|
| Q |
219 |
ttaactctatttttccacttagctttgccaacttgattccattagtttcttctccagcctaatcaaacaaacaacaaatttattaattggttacttcaac |
318 |
Q |
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| T |
33785875 |
ttaactctatttttccacttagcttttccaacttgattccattagtttcttctccagcctaatcaaacaaacaacaaatttattaattggttacttcaac |
33785974 |
T |
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| Q |
319 |
atcaaggcattaacaagctattagttgat-nnnnnnncgtgatttggtgattgattttctaaatctgtatcgtgatttaaatgattttttgtccgattta |
417 |
Q |
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| T |
33785975 |
atcaaggcattaacaagctattagttgataaaaaaaacgtgatttggtgattgattttctaaatcggtatcgtgatttaaatgattttttgtccgattta |
33786074 |
T |
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| Q |
418 |
aagactgatttgcaaaaaatggataaaactatggtcgataatgtttaacatttgtcatttttcggc |
483 |
Q |
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| T |
33786075 |
aagactgatttgcaaaaaatggataaaactatggtcgataatgtttaacatttgtcatttttcggc |
33786140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 33789507 - 33789587
Alignment:
| Q |
66 |
catcatagaatctttgtattaatgcaataacagttgattttccacatccactttttccaactagtccaacactttttccag |
146 |
Q |
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| T |
33789507 |
catcataaaatctttgtactaatgctattgctgttgattttccacttccacttgcaccaactagtgcaacagtttttccag |
33789587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 51159605 - 51159537
Alignment:
| Q |
67 |
atcatagaatctttgtattaatgcaataacagttgattttccacatccactttttccaactagtccaac |
135 |
Q |
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| T |
51159605 |
atcataaaatctttgtagtaatgagatcactgttgattttccacttccactttctccaaccagtgcaac |
51159537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 51202213 - 51202145
Alignment:
| Q |
67 |
atcatagaatctttgtattaatgcaataacagttgattttccacatccactttttccaactagtccaac |
135 |
Q |
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| T |
51202213 |
atcataaaatctttgtatcaatgagatcactgttgattttccacttccactttctccaacaagtgcaac |
51202145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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