View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19617_low_4 (Length: 447)
Name: NF19617_low_4
Description: NF19617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19617_low_4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 32167177 - 32167624
Alignment:
| Q |
1 |
aagctttctttttcaatggaactgtccaatctgatgtgtatattacctgactaaacccatcaggccaaggtattgaaacggcataatttcccattggtcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
32167177 |
aagctttctttttcaatggaactgtccaatctgatgtgtatattacctgactaaacccatcaggccaagttattgaaacggcataatttcccattggccg |
32167276 |
T |
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| Q |
101 |
aatttcttccggttcaatgtaatcaggaatatcggtatactgcaatttttgctcccccgtccattcatcctgtttaaaatgagttggataaagttagctt |
200 |
Q |
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| T |
32167277 |
aatttcttccggttcaatgtaatcaggaatatcggtatactgcaatttttgctcccccgtccattcatcctgtttaaaatgagatggataaagttagctt |
32167376 |
T |
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| Q |
201 |
ctaatgagatgaataaacagca-nnnnnnngtttatcttaaatatcaacataccacactctgagcagaccgatcattccgtctcactgttgcaggatgca |
299 |
Q |
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| T |
32167377 |
ctaatgatatgaataaacagcattttttttgtttatcttaaatatcaacataccacactctgagcagaccgatcattccgtctcactgttgcaggatgca |
32167476 |
T |
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| Q |
300 |
gaaagaattcttcatctgaatctggtacttttactctaattgccttgactgatttatcgtaggtcacagctgttgaaactgaattgaaaataacnnnnnn |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32167477 |
gaaagaattcttcatctgaatctggtacttttactctaattgccttgactgatttatcgtaggtcacagctgttgaaactgaattgaaaataacaaaaaa |
32167576 |
T |
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| Q |
400 |
nntatcaatcttagaaaaagcatgaatgctagaagttaaaaatttgta |
447 |
Q |
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| T |
32167577 |
aatatcaatcttagaaaaagcatgaatgctagaagttaaaaatttgta |
32167624 |
T |
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