View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19617_low_8 (Length: 313)
Name: NF19617_low_8
Description: NF19617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19617_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 8854435 - 8854136
Alignment:
| Q |
1 |
tcgacgattcaatctccaaattacctccatctatattgcttacttcttctagggcttgatattacctaggaa----gaaagttaatatttatgttttatg |
96 |
Q |
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| T |
8854435 |
tcgacgattcaatctccaaattacctccatctatattgcttacttcttctagggcttgatattacctaggaatgaagaaagttaatatttatgttttatg |
8854336 |
T |
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| Q |
97 |
tttttcagatcgaaagattgctcgtgatgttatggtaatggcaacaggagatgccccaacagaagttgactcaactgagctacctgagtttgttaagaat |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8854335 |
tttttcagatcgaaagattgctcgtgatgttatggtaatggcaacaggagatgcaccaacagaagttgactcaactgaactacctgagtttgttaagaat |
8854236 |
T |
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| Q |
197 |
cttcaagaagctgtatgattcataggttgttagaaattgtaatggaggnnnnnnnnnncctttcttaatgtttattaatgacctagaattatgttattta |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8854235 |
cttcaagaagctgtatgattcataggttgttagaaattgtaatgga-gttttttttttcctttcttaatgtttattaatgacctagaattatgttattta |
8854137 |
T |
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