View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_high_1 (Length: 1101)
Name: NF19618_high_1
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 939; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 939; E-Value: 0
Query Start/End: Original strand, 4 - 1086
Target Start/End: Complemental strand, 23756461 - 23755381
Alignment:
| Q |
4 |
aaaggttgtaaaatttgtgtgggcacaagcccacacatagagcagcatacatccttccatgctaaagtatcaagtttatagttgtgaccagatattcgaa |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23756461 |
aaaggttgtaaaatttgtgtgggcacaagcccacacatagagcagcatacatccttccatgctaaagtatcaagtttatagttgtgaccagatattcgag |
23756362 |
T |
|
| Q |
104 |
cgcttcctagtgccccaatcttcgccctagtcagttagatgattaacctccaaactatgtgatcaaggtgttcgggtcttgcgcttcgtctctt--cgac |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | || |
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|
| T |
23756361 |
cgcttcctagtgccccaatcttcgccctagtcagttagatgattaacctccaagctatgcgatcaaggtgttcgggtcttgcgcttcgtctctctccaac |
23756262 |
T |
|
| Q |
202 |
caggcacggggagcgatgggcctataggcgaagtcacattcggtctacaatcccccaagcacgagggtcggtcgacccatccaattcaaaagttgaatta |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23756261 |
caggcacggggagcgatgggcctataggcgaagtcacattcagtctacaatcccccaagcacgagggtcggtcgacccatccaattcaaaagttgaatta |
23756162 |
T |
|
| Q |
302 |
aaccaataaattacgatcaaagtagggccataatagagtctacataagcactcctactttaggggtatcattgagctaagtgtgtgtgagctagtgttct |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23756161 |
aaccaataaattacgatcaaagtagggccataatagagtctacataagcactcctagtttaggggtatcattgagctaagtgtgtgtgagctagtgttct |
23756062 |
T |
|
| Q |
402 |
gtggtagttggcttaaaagtttttcctgctaagctttcaaaaagggcaatgaatcatttgcttgagaatgaggtgtcacccttacataatcctttaattt |
501 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
23756061 |
gtggtagttggcttaaaagttgttc---ctaagctttcaaaaagggcaatgaatcatttgcttgagaatgaggtgtcacccttacatagtcccttaattt |
23755965 |
T |
|
| Q |
502 |
acatactgcaaaagatggttacacctacaaatatgaaaataaacacaattctcaccgaccttgatattggacaacataattaacaaatttgtgtctacac |
601 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23755964 |
acatactgcaaaaaatggttacacctacaaatatgaaaataaacacaattctcaccgaccttgatattggacaacataattaacaaatttgtgtctacac |
23755865 |
T |
|
| Q |
602 |
aannnnnnnnattactaatggtgcaataagatatagtaaaaactcacctattagaactagtgcaagctccattaatctaagtggatgactagaccaacca |
701 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23755864 |
aattttttttattactaatggtgcaataagatatagtaaaaactcacctattagaactagtgcaagctccattaatctaagtggatgactagaccaacca |
23755765 |
T |
|
| Q |
702 |
catttttagtactataaaatcccaccaaatgcatggggttcttgcatagaactaattaatttcactaagtgatttagacacatattaaggggnnnnnnnt |
801 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | | |
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|
| T |
23755764 |
catttttagtactataaaatcccaccaaatgcatggggttgttgcatagaactaattaatttcactaagtgatttagacgcatattaa-gaaaaaaaaat |
23755666 |
T |
|
| Q |
802 |
gaagggtcttatgaaattgctgtgcattgttggtattgcagtctttgttgcaggaactcatagagttgaaagtgctggtgaatgtggaaggggtactaca |
901 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23755665 |
ggagggtcttatgaaattgctgtgcattgttggtattgcagtccttgttgcaggaactcatagagttgaaagtgctggtgaatgtggaaggggtactaca |
23755566 |
T |
|
| Q |
902 |
ccagataatgaagcttttaagcttattccttgtgcaagtgcagcaaaagatgaaaatgctagtgtctcacaaagttgttgtgctcaggttaagaaacttg |
1001 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23755565 |
ccagataatgaagcttttaagcttattccttgtgcaagtgcagcaaaagatgaaaatgctagtgtctcacaaagttgttgtgctcaggttaagaaacttg |
23755466 |
T |
|
| Q |
1002 |
gtcagaatccaagttgtctttgtgctgttatgctttcaaacgttgctaaaatgtctggtgctaaccctcaaattgctgttactat |
1086 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23755465 |
gtcagaatccaagttgtctttgtgctgttatgctttcaaacgttgctaaaatgtctggtgctaaccctcaaattgctgttactat |
23755381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 804 - 1086
Target Start/End: Complemental strand, 23779396 - 23779114
Alignment:
| Q |
804 |
agggtcttatgaaattgctgtgcattgttggtattgcagtctttgttgcaggaactcatagagttgaaagtgctggtgaatgtggaaggggtactacacc |
903 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||| |||| |||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
23779396 |
agggtcttatgaagatgctgtgccttgttggttttgtagtccttgttgcaggtattcatagtgttgaaagtgctggtgaatgtggaagaggtactacacc |
23779297 |
T |
|
| Q |
904 |
agataatgaagcttttaagcttattccttgtgcaagtgcagcaaaagatgaaaatgctagtgtctcacaaagttgttgtgctcaggttaagaaacttggt |
1003 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
23779296 |
agatatggaagcatttaagctagctccttgtgcaagtgcagcacaagatgaaaatgctagtgtctcacaaacttgttgtgctcagactaagaaacttggt |
23779197 |
T |
|
| Q |
1004 |
cagaatccaagttgtctttgtgctgttatgctttcaaacgttgctaaaatgtctggtgctaaccctcaaattgctgttactat |
1086 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
23779196 |
cagaatccaagttgtctttgtgctgttttgctctcaaacgttgctaaaatgtctggtgttaatcctcaaattgctgttactat |
23779114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 979 - 1078
Target Start/End: Complemental strand, 23753468 - 23753369
Alignment:
| Q |
979 |
ttgtgctcaggttaagaaacttggtcagaatccaagttgtctttgtgctgttatgctttcaaacgttgctaaaatgtctggtgctaaccctcaaattgct |
1078 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
23753468 |
ttgtgctcaggttaagaaacttggtcagaatccaagttgtctttgtgctgttttgctctcaaacgttgctaaaatgtctggtgttaaccctcaaattgct |
23753369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 361 - 762
Target Start/End: Complemental strand, 23779834 - 23779431
Alignment:
| Q |
361 |
taggggtatcattgagctaagtgtgtgtgagctagtgttctgtggtagttggcttaaaagtttttcctgctaagctttcaaaaagggcaatgaatcattt |
460 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| | || | | |||||||||| ||||| || || | || |
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|
| T |
23779834 |
taggggcatcattgagctaagtgtgtacgagctagtgttctgtggtagttggtttaaaaggtactcat---aggctttcaaaatgggcattggattaatt |
23779738 |
T |
|
| Q |
461 |
gcttgagaatgaggtgtcacccttacataa-tcctttaatttacatactgcaaaag---atggttacacctacaaatatgaaaata--aacacaattctc |
554 |
Q |
| |
|
| |||||||||| |||||||| ||||||| ||| | ||||||||||| || || |||| ||| | || || |||||||| | || |||||| || |
|
|
| T |
23779737 |
gattgagaatgatgtgtcaccattacatagctccctaaatttacataca--aacaggtaatggctactc-tagaagtatgaaaaaacaaaaacaattgtc |
23779641 |
T |
|
| Q |
555 |
accgaccttgatattggacaacataattaacaaatttgtgtctacacaannnnnnnnattactaa-tggtgcaataagatatagtaa-aaactcacctat |
652 |
Q |
| |
|
|| | || ||||||||||||||||||| || ||||||||| |||||| ||||||| |||| ||||||||||| || ||||| ||| || |
|
|
| T |
23779640 |
acttaaattaatattggacaacataattatcacatttgtgtcgacacaagcttttat-ttactaagtggtacaataagatatgcgaagaaacttaccaat |
23779542 |
T |
|
| Q |
653 |
tagaactagtgcaagctccattaatctaag-tggatgactagaccaaccacatttttagtactataaaatcccaccaaatgcatggggttcttgcataga |
751 |
Q |
| |
|
| | ||||||||||| |||||||||||||| ||||||||| |||||| |||||||||||| |||||||| |||| ||||||||| | || ||||||||| |
|
|
| T |
23779541 |
ttgtactagtgcaaggtccattaatctaaggtggatgactcgaccaagcacatttttagtcctataaaaccccatcaaatgcattgcattgttgcataga |
23779442 |
T |
|
| Q |
752 |
actaattaatt |
762 |
Q |
| |
|
||||||||||| |
|
|
| T |
23779441 |
actaattaatt |
23779431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 347 - 418
Target Start/End: Complemental strand, 33279231 - 33279160
Alignment:
| Q |
347 |
aagcactcctactttaggggtatcattgagctaagtgtgtgtgagctagtgttctgtggtagttggcttaaa |
418 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
33279231 |
aagcactcgtagtttaggggcatcattgagctaagtgtgtacgagctagtgttcagtggtagttggtttaaa |
33279160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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